GgaINT0090259 @ galGal4
Intron Retention
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11721205-11722240:+
Coord C1 exon
chr3:11721205-11721405
Coord A exon
chr3:11721406-11721991
Coord C2 exon
chr3:11721992-11722240
Length
586 bp
Sequences
Splice sites
5' ss Seq
AAAGTTAGT
5' ss Score
4.24
3' ss Seq
CTGTTATTTTAATCTTGAAGGAG
3' ss Score
6.44
Exon sequences
Seq C1 exon
GTTCAATCTTCAGTAGCTGTTGGGACGCCAGACTACATCTCTCCAGAAATTTTGCAGGCCATGGAAGATGGAAAAGGGAAGTATGGGCCTGAGTGTGACTGGTGGTCCCTAGGCGTTTGCATGTATGAAATGCTTTATGGAGAAACACCCTTTTATGCTGAGTCCTTGGTGGAGACCTATGGGAAAATAATGAACCACAAA
Seq A exon
GTTAGTGCATTTTCTCTTTCTGTCTCTCTCAAAGCTAATTTTCATAAGCAGTAGGGTAACTTGGAGGCATATTTTAAAATGATTTTTTTAATGTAATAATTGTGTTAACATTCATTAATGTAGAACATAAAATGTTTCCACATAAAGAGTTATGGTTTGCAGATGGATTTGCTTTGGGATAAAGCAGTTCAAAATTAAAAATCTGGATTTAGCAAAATGGCTGTTAGTTCACTCACTGCAGTAAGTCTTGGCTACACTGCTTTGCTCCTTCTGCGCTCTTTTTTTCTGTTGGATACATTGGTTGGCTTATGCAGCAGATTCTTAAATGTTCTTCCACCTGGAGGCAGCTGTAGAGTCCAACGGTTTAAGAGCAATTCAAATAAACACGAAAAACCAGAATACAAAAAAGTTTCAGTAGTTCCTTTTTCCTTTGGGAAAAGTGTTTTTCCTAGAAACCTTGCTGTATATTTTTAATAACTTGAGTATTTGCACGTTTATTTTTCTACTTAATAATTATCACTCGGAAGGGTGATTTTTCACACTTTTACTTGGTAATAAACTATTTTCTGTTATTTTAATCTTGAAG
Seq C2 exon
GAGAGGTTCCAGTTTCCTGCTCAAGTGACGGATGTCTCTGAAAGTGCAAAGGACCTCATCCGAAGGCTAATTTGTAGCAGAGAGCATCGGCTTGGACAGAATGGGATAGAAGACTTTAAGAACCATCCATTTTTTGCTGGGATTGACTGGGACAACATTAGAAACTGTGATGCACCTTACATTCCAGAAGTCAGCAGCCCCACTGATACATCAAACTTCGATGTGGATGATGATTGCTTAAAAAATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158:ENSGALT00000039364:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.7=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(42.6=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGTAGCTGTTGGGACGC
R:
GTTGTCCCAGTCAATCCCAGC
Band lengths:
350-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]