GgaINT0090278 @ galGal3
Intron Retention
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13318034-13318941:+
Coord C1 exon
chr3:13318034-13318173
Coord A exon
chr3:13318174-13318859
Coord C2 exon
chr3:13318860-13318941
Length
686 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ATGTTTATGGTCTCCACAAGGGA
3' ss Score
3.84
Exon sequences
Seq C1 exon
GTACCAAAACCAGCTGGTGTAAAGAAAGGTTGGCAGAGAGCACTGGCGGTAATCTGTGATTTTAAACTCTTCCTGTATGATATAGCAGAAGGAAAAGCATCGCAGCCAAGTGTGGTAGTGAGTCAGGTCATAGACATGAG
Seq A exon
GTAAGCTTTTTGGTGCTGAGTGGGAACTTGCCGTGGGAGCGGGGGGTGGCAATTCAACCTTCATTACTACTTCATGTACTACATTTCATCTCCTCAGCTGTATGGAAGATCTGGAATGAGTAAAGAAGAGAATTTTTTTTAGGTTGAATAGAGTTTTTGAAGACAGATTGACCTCTGTGGTTAAAATTAGTATAAATTTTTATGCAGAAGGATTTGTATCTTGTTCATCTTCAGCATTATTGAAGTACTACTGATGTCACTGAGGGTTAAGGACATGTAAGCTATAACTGGATACATTAAAACTTCTAGGGTGTTTGGATTTTTATGAAATACTTGGAAGGATGTTCTTCAGTGTCTTCTTTATAGTTTGATTTTTGTAAAGTTTTAGACAGACACAAAAACAAGTATTGGGAGAAGATTTTTTTCTATCGGTGTATACTAGGAATTAGTTATGTACCAATGTATTTGTGAGTTTCACCTGCAGATAAAGGGGAAAGTTGCAATAACTTTAAAAATTAGATCTCAGTACTATCTTGTTGTGCCCTTAACAAATCAAGGATATCGGTACTATGGAAATTAAGCTAAAAAAAACCCAAACAAACACACACACACAAAAAAAAAAAACCAGCAAACATAGATTTGACTCTGTTTAACTCTTTTGCAATAATGTTTATGGTCTCCACAAG
Seq C2 exon
GGATGAAGAATTCTCAGTGAGTTCTGTCTTGGCTTCGGATGTCATCCATGCAAATCGAAAAGATATCCCCTGTATCTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158:ENSGALT00000014921:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGTAAAGAAAGGTTGGC
R:
AAGATACAGGGGATATCTTTTCGA
Band lengths:
206-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]