GgaINT0091083 @ galGal3
Intron Retention
Gene
ENSGALG00000011241 | RFTN1
Description
NA
Coordinates
chr2:34280760-34282252:-
Coord C1 exon
chr2:34282149-34282252
Coord A exon
chr2:34280842-34282148
Coord C2 exon
chr2:34280760-34280841
Length
1307 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GTGCATTTGTTTCTTTTCAGGGA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGGGTGGAAGTGCAGACAGACTATGTTCCACTGCTGAATTCCCTTGCCATATACGGCTGGCAGCTGACATGCGTCCTTCCTACTCCAATTGTGAAGACAAACAG
Seq A exon
GTAGGGAGGGCGAGCGCTGCTTTTCAGCCACTGTCTGTGCACCAAAAGCAACTCTCTGCACAGTTAGCATAGATTTTCTTGCCCGCGTTCAGTACCTTTGCAAACCTTCCTGCAACTGTTCTCTGGGTTTTCTGAGTACCACAAGCCATGTTAGGCAGGAAGCACGTGTCTGGTGGGCAAAAGAATGCAAAATGGCTCTGTGGTTTCTGCATGTATGTTCTGATTATCATCTCTGTCTCTGTGTTAAAAATAAATAAATAAATCCCTGCTGTGGTTCTCTCACTTAGTAGCTCCACTTGGAGCAAAAGCAAAACCCGTGATAATGTTTGGAGTGAGATGTTGCCTATTTGAAACAAATTAATTTCATTCTTAATTACTATCTGTCTAATGCTGATGGCACACACAGTCTAGCTGAGCAGAACCATGTCCAATTATTGTGACGTTACTCTGGTAGCCTTGTTTGCAAATGTAGTCATTGTGTGGGGTCTGCTTTGCTATTATTAATATTCAGAGATTTTAGACATAAATGCATGTCACTTAAAAATAGTCTCTCTAATGGTGGTGAAAAAACAGTCACCCCGCTTGCTTATCATGAAGATGGAGCATTCTGGATTTACACTAATCAGGAATATATTTATATATAAACCAATGTAATCGGTCATGATTTTTTTTAGCTGACGAAAGGAAAAATATGCCCAGCTCCTTTAGAGAGCTAGATGAAGACTGTTCCTACACATAAAAGCCTAAAAAGTAAAGGCCATCTGTGCCAGTATATTAAAGGCTTTCATGTACATTTAAATATAGGAACAAATGGAAAATCATAATTATGGTATGTAAGCCTTGTCCTTTAAGGGTCCATTGTTTTCTCTTCTGGTTTTCTGTATTCCTTTTATAACTCCAGTAACACAGGCCAGGTTGGAAGCGCAAAAAGGCACCCAATTCAACTGCTGCTGGCATTTGCTTCTGCTTCCTGCCTTGCTGCATGTCTGTGGGGCACACACAGCCCCATCGGGGCTACGCATGTGCACCATAAGTTTCTTGCTTTTTCTTCAAAACAATTTCTTTTGTTTACACTCTAATTCTAAAACATTCAGCTAAAGCATGTCACAGCAACAGACTCAGTTGATCGTTTTTCCCCCCAAATGTCAGGCTGCTTAGAGACACTGGGGACAAGCAATGTTTAGGTCATTCTTCATTTTGTTCTTCTTTGACCTGCAGAAATAAATGACTGAGATGGATTTTTGCTCTGAGTGATGCTGCATGTGAATTTAATTCATTCTCAGGAGTGTGCATTTGTTTCTTTTCAG
Seq C2 exon
GGAAGGGAATTTATCTACAAAGCAAATTGTATTTCTTCAGAGACCTTCTTTGCCCCAGAAAGCAAAGAAAAAAGAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011241:ENSGALT00000018331:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(6.9=100)
A:
NA
C2:
PF152501=Raftlin=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]