GgaINT0091523 @ galGal3
Intron Retention
Gene
ENSGALG00000009129 | DLX5_CHICK
Description
NA
Coordinates
chr2:24415562-24416593:-
Coord C1 exon
chr2:24416409-24416593
Coord A exon
chr2:24416274-24416408
Coord C2 exon
chr2:24415562-24416273
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GCTCTCCCCCCCTCTCGCAGGTG
3' ss Score
11.45
Exon sequences
Seq C1 exon
AGAAGGAGGTGGCGGAGCCCGAGGTGAGGATGGTGAACGGCAAGCCAAAGAAAGTGCGCAAACCGCGGACTATTTATTCCAGCTTTCAGCTGGCGGCGTTGCAGAGGAGGTTCCAGAAGACCCAATACCTCGCCCTGCCCGAGCGGGCCGAGCTGGCCGCCTCGCTGGGACTCACGCAGACGCAG
Seq A exon
GTACGCGGCTCGGGGCGCTGCGGGCCGGGCCGGGCCGGGCCGGGCCGGGTAGGGGGGGGGTCCCGCAGCGATCCCCGCTGCCCGCGCCCGGCCCTGACCGTGTGGGTTTCCCTTCGCTCTCCCCCCCTCTCGCAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACAAAAGGTCCAAGATCAAGAAGATCATGAAGAACGGGGAGATGCCCCCGGAGCACAGCCCCAGCTCCAGCGACCCCATGGCCTGCAACTCCCCGCAGTCGCCGGCGGTGTGGGAACCTCAGGGCTCGTCGCGCTCCCTCGGCCACCACGGGCACGGGCACCCGCCCGCCGCCAACCCGTCCCCCGGCAGCTACCTGGAGAGCCCCTCGGCCTGGTACCCCGCCGCCAGCCCCCTCGGCTCCCACCTGCAGCCCCACGGCTCCCTACAGCATCCCTTGGCGCTGCCCTCCGGGACGATCTACTGAGGGCCGAACCCTCGTGCTTCTTTTGTATTCCGCTCCCTGGACTCCTGTGTTTTACTGTTAAGGAAGAATAACGAAAGGAATGCGGATGGGGGATTTTTAAAGGGAAACGAAACAAACAAACGACGACGACAACGACAAACAAACAAACAAACAAAAAAGGTTAAAATGTGTAAAGCTTGTGCATGTAACTTATTGCATTTCAAAGGAACCCTTTTTTATACCGCGCGGACGTTTTTCGGCTCAGCTGTGGACACTGTCAATGGTGCCTTCAAATCTATGACCTCAACTTTTCCAGAGACTTTTTTTCAATGTTATTTTAACCCTTGTAAATAATTGTAGATAGAGGAATTAAACTGTATATTCTGAATAAAATAAAATTATTTCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009129:ENSGALT00000015249:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.716
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=67.7)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAGAAAGTGCGCAAAC
R:
GTTGCAGGCCATGGGGTC
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]