HsaINT0048743 @ hg19
Intron Retention
Gene
ENSG00000105880 | DLX5
Description
distal-less homeobox 5 [Source:HGNC Symbol;Acc:2918]
Coordinates
chr7:96649702-96651681:-
Coord C1 exon
chr7:96651497-96651681
Coord A exon
chr7:96650378-96651496
Coord C2 exon
chr7:96649702-96650377
Length
1119 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GCCTTTGTTCCCCAACTCAGGTG
3' ss Score
8.94
Exon sequences
Seq C1 exon
AGAAAGAAGTGACCGAGCCCGAGGTGAGAATGGTGAATGGCAAACCAAAGAAAGTTCGTAAACCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCATTACAGAGAAGGTTTCAGAAGACTCAGTACCTCGCCTTGCCGGAACGCGCCGAGCTGGCCGCCTCGCTGGGATTGACACAAACACAG
Seq A exon
GTAAATACGGCGCTGCCATGCACTAGACCTGCCTGAGCTGCACGTCTGGTTGGGTCGCGCGGTTCAGTCTCGATGGGACTGGAGCTGTTTTGACAGTACCCGTGAGAAACTAACAGACCCAAAGACATCAGCCCCTATGCTTTAACTCGGTGAGTCAGGCCTTGAGACGGTGGGGATGGTATTCATCAGCGGTCTGGAGATACCTCCCACTAACCGCGCCCCCCGCCCCCACCCCGTAGCGGGCCTCCGGAGCTGTGGGGCCAATTTCGCGGGTTGAAAGCAAGCGGAGGGTTATTTCTAGGGCGGCCTAGGCAGCCCAGAGCAGCTATCTGGTTTTCTTAACAATGTAGAGCCTCCTCGGGGGTGAGCAAGGCCTGGTGTTCTCGCGGTGGTCTCAGGCTAAGAAAAGGCTGAGAACGTCGCCTGGAGCGGAGAAACTGAAGGGTCGTGCCCTGAGCCTACGGGAGCTTCAGGCCACGGCCACCGAAGGGTCGCGAGGTGGGGGGCGCTATTGTACGTGAGAAGTCTTCCTGGATTGTCCCATTCCTTTTACTCCTCCAACCCAGCTGGGGCCTACGGAAGCATAAAGAATGTTCGAGTCGCCGCCAAGAGCTGCAGTCAGATTCTGGCCTCTCTGAGCTGCAGAGGGAGTGAAGGGAGTAGGACGGGAGGTTGGGAGCTCGCTCCTTTTTCTGACCACAGGCGCGCGTAGCCCGCCCCACGCCCCTTCCCCGCCGGGCTCGCGCGATTGTTTTGGAGACCTTCGCCGCGTTCCGCGCGTCCTGCGCAGGCTTACACGAGGCGCGCCGCCGCCGAGGACACTCGGGCGCACACCCGCCGCGCTGGCGTCCCCCACCCCCAGCCCAAACAAAAGACAAGCCTTGGGGTCGTGGCCTCGCTGGGCCGGGGCGCCCCGAGCCGGCCAGGGCGCCCTCTGGGGCCAGAGCTCCATGGTTTGCCTAAGGCATAGCTTCTTGGCGGTAGGCCGCAAGCGGCGGGGAGACGCCAGGCAGGGCTGGGCCGCCCAGAGGTCCGAAGATGCCTCCAGTCGCCGCCCCGGGGAAGGCGCGGGCGACCTCTGAGTGTCCCGGTAACGTGTGCCTTTGTTCCCCAACTCAG
Seq C2 exon
GTGAAAATCTGGTTTCAGAACAAAAGATCCAAGATCAAGAAGATCATGAAAAACGGGGAGATGCCCCCGGAGCACAGTCCCAGCTCCAGCGACCCAATGGCGTGTAACTCGCCGCAGTCTCCAGCGGTGTGGGAGCCCCAGGGCTCGTCCCGCTCGCTCAGCCACCACCCTCATGCCCACCCTCCGACCTCCAACCAGTCCCCAGCGTCCAGCTACCTGGAGAACTCTGCATCCTGGTACACAAGTGCAGCCAGCTCAATCAATTCCCACCTGCCGCCGCCGGGCTCCTTACAGCACCCGCTGGCGCTGGCCTCCGGGACACTCTATTAGATGGGCTGCTCTCTCTTACTCTCTTTTTTGGGACTACTGTGTTTTGCTGTTCTAGAAAATCATAAAGAAAGGAATTCATATGGGGAAGTTCGGAAAACTGAAAAAGATTCATGTGTAAAGCTTTTTTTTGCATGTAAGTTATTGCATTTCAAAAGACCCCCCCTTTTTTTACAGAGGACTTTTTTTGCGCAACTGTGGACACTTTCAATGGTGCCTTGAAATCTATGACCTCAACTTTTCAAAAGACTTTTTTCAATGTTATTTTAGCCATGTAAATAAGTGTAGATAGAGGAATTAAACTGTATATTCTGGATAAATAAAATTATTTCGACCATGAAAAGCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105880-DLX5:NM_005221:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.725
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=67.7)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCGCATTACAGAGAAGG
R:
GCACTTGTGTACCAGGATGCA
Band lengths:
344-1463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)