GgaINT0091860 @ galGal3
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
NA
Coordinates
chr2:30682551-30685767:-
Coord C1 exon
chr2:30685689-30685767
Coord A exon
chr2:30682701-30685688
Coord C2 exon
chr2:30682551-30682700
Length
2988 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GCCTTTCTTCCTTTGTGCAGTTT
3' ss Score
9.08
Exon sequences
Seq C1 exon
AACAAAACCTTTTTCCACCAGTTCAGTCTAAAGGAGAACTGGCTGCAGCACAGAGGAACCATGAATGAAGCAGAAGAAA
Seq A exon
GTAAGTATGGCTTAGTTAAGAATGGGAAAAAACCTAGCACGGTGCTTTTAAATGTCAGGGCAACCTTTTTTAGTAAGAGCTGCCTGTTCAGGTACAGTCTTCTTCCAGGCATACAGCTTCTGAACAGGACCCTGGGGCCTCGAAAGGAGAGAGATTTGCCTGTGTGAAGATTACCTGTCTGTCTCCTGCTTTGCAGAGAGGCTCAGCAGTAGAGTGAGATCTCAGGCTTTCCGCCTGCCCAATTCCTCTTTGGCCCCTTGACAGAGTTGTGCAGCTCACAGCCTATCCATCAGAGGTGAAAACTGTAACACAGGGCAGGAACAGTCTCCTGACCTAGATCCTGTGTGTGAGAGGTGAATACACCTGTCAGGTTAAGTGGGGCAGGATCTGCTATCTCTGAGAAGCTGCGTAGGTTCTCTCCACAAAAACATTTCCACATAGTGGGTGAGACGTAGCGGGTGAGATGCCACTATGCTTTAATGTCAAATACTTCATTTTTCCCTTCATTGCTGCTAAAGCAATGGTAAAGTGAAGCTCTCACCCTGCTGTAATGCCTGTGAGAGAAAGGAGGCAGAGAGGGGAATAACATGCACACAAGCAGAGAACAGGCAGAAAGGCCTCCTCCTGGGACATATAGTCCTTTAAACAGTATTATCTTCCTTTCTTGGTGGGAACAAAACTCCAGAAGTTCAGGCTGAGTCAGGGTAGTTAGTTAAGTTCTGAGTCAGAGTTTTAGTGCTCGTTTGTGACACGGTAACAACTGAGCTCCTGTAGTGACACGTCTCTGCCTACATTATGTACTACTGGTAGATAGATAGCCTCTTTCTGTGCCTGAAATTTAAGTTTATTTGAGGTTTAGACTGATGAGGCTGCTTCTAAAAATGTCATTTCTGGATGAAAACCCCCACACTCGTTTTTCTTCTTAAAAAGTCTGACACAGCTCATGAAAAGCGTACAGGTACAAGAGAGGGCACAGGCTGAATGGCCATGGGGACAGGAAAGGCTGGACTCAGCAAGACCATAAATTGCTTTGCTGTCTCTTCTTGTGAGCATGAGCCATGGAACGTGCTGGGACTGAGGGAATGAAGTACAACGTGGAAGACTAGGGAAAGGAGAGACAGGTGGCTGGGCACAATGGAGGGAAATGGGATGGGCTGTGGAGTGCTGCCACGTGACGGTGCTCGTGGAGGTTGTCCAATGCCTCCTGCCCTCAGTGGTAGAGATCAGACCAGAAGCATTCTACCTCCTAATGTAAGCATTTCCAGGATGGTTTACAGCCCATTCCCATATCCTCCTGTGTTCCCTGCTGCATTTCAATGAGGAGCAGTGTAGGCTCTTGGAAGGGATGACATGGCCCATGCCCATGGATCCCACAGCTGGGACATGTGAAAGGTGTGTTGTGGGGGGGGGAGGTTTTGGGATAATTACTGTGATGATTGCTTTCAAGAACCTGACCTGTAGGTTGGTTTAGTTTGGTGCTAAACAAAGGATACGTCAATAGCCCAACTACAAGTTGATATTTTGCTGTCACCTTCCTCTCCCAAATAACAGCAGTTGAGGCTTCAAACAAATTCAAGTTGTGTTGCGCTTTGCATATAGAGGGCAAATATTTGTGTCAGATTTATTTATTTTCTTATTTCGGGTGCAGTTGATTTATCTGTCTTTTCACGATGTATATGTATTCCGAAGAAAGATTCTGACACATGCTGAGCACCTGATTTACTGTCTGTCAGCAGAGACAAGTTAAGAAAAAAATTATAAAATCAAATGGCTTTTCTTCCCCAAGGTTAAACATTGAGTTCCTCCTTCCTTCTTATCTTCATTTTTCTCTTCTACAACACACACACAAAAAAGATGTTCAGTAAGATAGAGTTGTTAACCATTTCTGGCATGGTCTCAGTTAATGGCAGTGCCCTGAAGCCATGAAGATTTGTAGGACAGACAAGGAGCTATTGCTGCATACATCTGTCAATAAAAATACAGCATTTCTGGGGAATAAAAGTATTGTATTATACTGCCATGGTAGCAGCCTATCTGCAGTACGAAGTACAAAAGTAGAAGAAAATTGAAAGTTTAAGCACAGAACTGAGTATGAAATCCAGAGTTGTGGTGTTTCTCATTAGCAGGTGTCATTTTTGAGATATCTGTGCAAGTCTACAGCTGTTTCTTCCCTTTTAAGTATGGCAGCTCTATTTCAAATGACTGGCTACAGCAAACTCAGCAAAAAAGACTGCAAACCTAAAATTCTGGGAAGCAGAGGGAGCGTACCTAACTTCTGAAGAAGCAACAAAGTATTACATGAGCTTCCTGCAGCATTACTGATGGGAATTGCCCCCAGAGCCTAACCAGTTCTAGGACTTCAGTGGAAGTTATGAGCACAGAGATTTTGTCCAAACCAGTCCCTTTATGTGTACTGCAAGTGGCTGAGGATAGATTTGTCAGAATGAATTGCACTGCTGTTTATGCAGCCTCTGCTGGTGCAAAAAAATGCCCTGGCAATGCCCATCACTAGGTGTCCAGACAGATAAGCTAGCGAGAGTGGTTACAGAGCAGGGAGCTTCTCGAGAAGCATGCTGTTCCAGATGAAAGTGGAGGAGCAAAACAGTTTCTGCAGCAGGTATGAGACGCACTGAAAGAATGCTAATTTATCTCGGCCTAGAAGGTAAGAACAAAAGGTGATAGCCACTAAGGTTGCAGTGAAGGTGTACAGCAAAGGAATTTGTCTACATTGAGTCCGCAGGGTAGGAACTCTTAAATAGGCTTCCCTGAAATGAATCCATGGAGATGCATTTGCTTGTCCCTGTCATTTCCCAGAGAGAAGAGGTGGGAAGTGGGGAAATGGTGATGTTTGCGCTCAGTTTCATGTCCCTCTTGGGCAGGGTGCAGGAGTAGCCTGTCTTGCGGCTGGGACTGGGGCTGCAAGGCTTTCCCCTGTTCCTGCGGGGTGCCTTTGGCTGCCGCTGAGCCTGCCTTTCTTCCTTTGTGCAG
Seq C2 exon
TTTTCTGTCGCGTGTACATCACGGAGCACTCCTACGTCAGCGTGAAAGCTCAAGTAACCACTTCAGCGCAGGAGATAGTGAAGATTGTTGCAGAAAAGATCCAATACCCGGAGGAGGAATTGGCACTGGTGATCATCACATTCTCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079026=Gp58=FE(23.2=100),PF0127615=OKR_DC_1=PU(36.4=74.1),PF0078818=RA=PU(2.5=7.4)
A:
NA
C2:
PF079026=Gp58=FE(44.6=100),PF0127615=OKR_DC_1=PD(61.8=66.7),PF0078818=RA=FE(62.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]