GgaINT0091860 @ galGal4
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30785416-30788632:-
Coord C1 exon
chr2:30788554-30788632
Coord A exon
chr2:30785566-30788553
Coord C2 exon
chr2:30785416-30785565
Length
2988 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GCCTTTCTTCCTTTGTGCAGTTT
3' ss Score
9.08
Exon sequences
Seq C1 exon
AACAAAACCTTTTTCCACCAGTTCAGTCTAAAGGAGAACTGGCTGCAGCACAGAGGAACCATGAATGAAGCAGAAGAAA
Seq A exon
GTAAGTATGGCTTAGTTAAGAATGGGAAAAAACCTAGCACGGTGCTTTTAAATGTCAGGGCAACCTTTTTTAGTAAGAGCTGCCTGTTCAGGTACAGTCTTCTTCCAGGCATACAGCTTCTGAACAGGACCCTGGGGCCTCGAAAGGAGAGAGATTTGCCTGTGTGAAGATTACCTGTCTGTCTCCTGCTTTGCAGAGAGGCTCAGCAGTAGAGTGAGATCTCAGGCTTTCCGCCTGCCCAATTCCTCTTTGGCCCCTTGACAGAGTTGTGCAGCTCACAGCCTATCCATCAGAGGTGAAAACTGTAACACAGGGCAGGAACAGTCTCCTGACCTAGATCCTGTGTGTGAGAGGTGAATACACCTGTCAGGTTAAGTGGGGCAGGATCTGCTATCTCTGAGAAGCTGCGTAGGTTCTCTCCACAAAAACATTTCCACATAGTGGGTGAGACGTAGCGGGTGAGATGCCACTATGCTTTAATGTCAAATACTTCATTTTTCCCTTCATTGCTGCTAAAGCAATGGTAAAGTGAAGCTCTCACCCTGCTGTAATGCCTGTGAGAGAAAGGAGGCAGAGAGGGGAATAACATGCACACAAGCAGAGAACAGGCAGAAAGGCCTCCTCCTGGGACATATAGTCCTTTAAACAGTATTATCTTCCTTTCTTGGTGGGAACAAAACTCCAGAAGTTCAGGCTGAGTCAGGGTAGTTAGTTAAGTTCTGAGTCAGAGTTTTAGTGCTCGTTTGTGACACGGTAACAACTGAGCTCCTGTAGTGACACGTCTCTGCCTACATTATGTACTACTGGTAGATAGATAGCCTCTTTCTGTGCCTGAAATTTAAGTTTATTTGAGGTTTAGACTGATGAGGCTGCTTCTAAAAATGTCATTTCTGGATGAAAACCCCCACACTCGTTTTTCTTCTTAAAAAGTCTGACACAGCTCATGAAAAGCGTACAGGTACAAGAGAGGGCACAGGCTGAATGGCCATGGGGACAGGAAAGGCTGGACTCAGCAAGACCATAAATTGCTTTGCTGTCTCTTCTTGTGAGCATGAGCCATGGAACGTGCTGGGACTGAGGGAATGAAGTACAACGTGGAAGACTAGGGAAAGGAGAGACAGGTGGCTGGGCACAATGGAGGGAAATGGGATGGGCTGTGGAGTGCTGCCACGTGACGGTGCTCGTGGAGGTTGTCCAATGCCTCCTGCCCTCAGTGGTAGAGATCAGACCAGAAGCATTCTACCTCCTAATGTAAGCATTTCCAGGATGGTTTACAGCCCATTCCCATATCCTCCTGTGTTCCCTGCTGCATTTCAATGAGGAGCAGTGTAGGCTCTTGGAAGGGATGACATGGCCCATGCCCATGGATCCCACAGCTGGGACATGTGAAAGGTGTGTTGTGGGGGGGGGAGGTTTTGGGATAATTACTGTGATGATTGCTTTCAAGAACCTGACCTGTAGGTTGGTTTAGTTTGGTGCTAAACAAAGGATACGTCAATAGCCCAACTACAAGTTGATATTTTGCTGTCACCTTCCTCTCCCAAATAACAGCAGTTGAGGCTTCAAACAAATTCAAGTTGTGTTGCGCTTTGCATATAGAGGGCAAATATTTGTGTCAGATTTATTTATTTTCTTATTTCGGGTGCAGTTGATTTATCTGTCTTTTCACGATGTATATGTATTCCGAAGAAAGATTCTGACACATGCTGAGCACCTGATTTACTGTCTGTCAGCAGAGACAAGTTAAGAAAAAAATTATAAAATCAAATGGCTTTTCTTCCCCAAGGTTAAACATTGAGTTCCTCCTTCCTTCTTATCTTCATTTTTCTCTTCTACAACACACACACAAAAAAGATGTTCAGTAAGATAGAGTTGTTAACCATTTCTGGCATGGTCTCAGTTAATGGCAGTGCCCTGAAGCCATGAAGATTTGTAGGACAGACAAGGAGCTATTGCTGCATACATCTGTCAATAAAAATACAGCATTTCTGGGGAATAAAAGTATTGTATTATACTGCCATGGTAGCAGCCTATCTGCAGTACGAAGTACAAAAGTAGAAGAAAATTGAAAGTTTAAGCACAGAACTGAGTATGAAATCCAGAGTTGTGGTGTTTCTCATTAGCAGGTGTCATTTTTGAGATATCTGTGCAAGTCTACAGCTGTTTCTTCCCTTTTAAGTATGGCAGCTCTATTTCAAATGACTGGCTACAGCAAACTCAGCAAAAAAGACTGCAAACCTAAAATTCTGGGAAGCAGAGGGAGCGTACCTAACTTCTGAAGAAGCAACAAAGTATTACATGAGCTTCCTGCAGCATTACTGATGGGAATTGCCCCCAGAGCCTAACCAGTTCTAGGACTTCAGTGGAAGTTATGAGCACAGAGATTTTGTCCAAACCAGTCCCTTTATGTGTACTGCAAGTGGCTGAGGATAGATTTGTCAGAATGAATTGCACTGCTGTTTATGCAGCCTCTGCTGGTGCAAAAAAATGCCCTGGCAATGCCCATCACTAGGTGTCCAGACAGATAAGCTAGCGAGAGTGGTTACAGAGCAGGGAGCTTCTCGAGAAGCATGCTGTTCCAGATGAAAGTGGAGGAGCAAAACAGTTTCTGCAGCAGGTATGAGACGCACTGAAAGAATGCTAATTTATCTCGGCCTAGAAGGTAAGAACAAAAGGTGATAGCCACTAAGGTTGCAGTGAAGGTGTACAGCAAAGGAATTTGTCTACATTGAGTCCGCAGGGTAGGAACTCTTAAATAGGCTTCCCTGAAATGAATCCATGGAGATGCATTTGCTTGTCCCTGTCATTTCCCAGAGAGAAGAGGTGGGAAGTGGGGAAATGGTGATGTTTGCGCTCAGTTTCATGTCCCTCTTGGGCAGGGTGCAGGAGTAGCCTGTCTTGCGGCTGGGACTGGGGCTGCAAGGCTTTCCCCTGTTCCTGCGGGGTGCCTTTGGCTGCCGCTGAGCCTGCCTTTCTTCCTTTGTGCAG
Seq C2 exon
TTTTCTGTCGCGTGTACATCACGGAGCACTCCTACGTCAGCGTGAAAGCTCAAGTAACCACTTCAGCGCAGGAGATAGTGAAGATTGTTGCAGAAAAGATCCAATACCCGGAGGAGGAATTGGCACTGGTGATCATCACATTCTCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079026=Gp58=FE(23.2=100),PF0078818=RA=PU(2.5=7.4)
A:
NA
C2:
PF079026=Gp58=FE(44.6=100),PF0078818=RA=FE(62.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]