GgaINT0092823 @ galGal4
Intron Retention
Gene
ENSGALG00000011905 | CTNNB1
Description
catenin beta-1 [Source:RefSeq peptide;Acc:NP_990412]
Coordinates
chr2:44046873-44048181:+
Coord C1 exon
chr2:44046873-44047093
Coord A exon
chr2:44047094-44047402
Coord C2 exon
chr2:44047403-44048181
Length
309 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTTTTTTTCTTTCTTGCAGCTG
3' ss Score
13.25
Exon sequences
Seq C1 exon
ATCCTAGCTACCGTTCTTTCCACTCTGGCGGATACGGTCAGGATGCCTTGGGTATGGACCCTATGATGGAACATGAAATGGGTGGCCACCACCCTGGTGCTGACTACCCAGTTGATGGTCTGCCAGATCTTGGCCATGCCCAGGACCTTATGGATGGGCTGCCTCCAGGTGACAGTAATCAGTTGGCCTGGTTCGATACTGACCTGTAAATCATCCTTTAG
Seq A exon
GTAAGAAGCTCCAATCTTGAATTTAAAAACAAAGCAAAAAGAGAGAAACAAATTACTGGACTCAGGACTTGGTTGGCAGGGAGGGAATGGCTTAAATGGGTCCCAGTGTGACAGAATACTGAAAATTAAAAATAAAGCTCTGGAGACAACACTATCAGTACATTCCTACAATCCAAACTGACTTCTGCCGTGAAGTGTGGAAGTAATTAACTGTAATGTCTTGTGCATCGTCAGCTTCATGCAGTCTTTATGTTAAAATACCTTTTACTGAGGAACACTGACATCTTTTTCTTTTTTTCTTTCTTGCAG
Seq C2 exon
CTGTATCATCTGAATGAACTTGCATTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTAGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAATTGAAGTAAACTTTTTGTTCTGGTCCTTTTTGGTCGAGGAGTAATAATACAAATGGATTTTGGGAGTGATTCAAGAAACGAGGAATGCACAAGAATGAATTGCAAGATGGAATTTATCAAACCCTAGCCTTGCTTGTTAAAAATTTATTATTTTTTTTAAATCTCTGTAATGGTACTGACCTTTGCTTGCTTTGAAAGTAGCCTTTCTTTTCGCAGTAATTGTTGTTAGGTTTTTTTTTTTAAGTCTCTCGTAGTATTAAGTTATAGTGAATATGCTACAGCAGTTTCTAATTTTTAAGGATTGAGTAAAGGTGTAGAACACTAATTCATAATCGCTCTAACTGTATTCTGAATAAAGTGTAACATTGTGTAGCCTTTTTGTATAAAAAAACTAGACAAATAGAAATGGTCCAATTAGTTTCCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTATTTCATGTTTTTGATCAAAAACTTTATCTGGGATATGTCTGGGTAGGGGCCAGTAAGAACTGTTTATTTGGAACCTTGTATTGGACAGTTTACCAGTTGCCTTTTATCCCAAAGTTATTGTAGCCTGCTGTGATACAGATGCTTCATGAGAAAAATGCAGTTATAAAATGGTTCAAAATTAAAGTAAACTTTTAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905:ENSGALT00000019428:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGATGCCTTGGGTATGGA
R:
CCTCGACCAAAAAGGACCAGA
Band lengths:
346-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]