BtaINT0045063 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13888184-13889468:+
Coord C1 exon
chr22:13888184-13888404
Coord A exon
chr22:13888405-13888706
Coord C2 exon
chr22:13888707-13889468
Length
302 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCCTTTCTCTCTTTATACAGCTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATCCCAGCTATCGTTCTTTTCACTCTGGTGGGTACGGCCAGGACGCCTTGGGGATGGACCCCATGATGGAACATGAGATGGGCGGCCACCACCCTGGTGCTGACTATCCAGTTGACGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCCCCGGGCGACAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAG
Seq A exon
GTAAGAAGTTAAACAAGCCAGTTTGGGTAAAATACTTTTACTCTGCCTACAGAACTTCAGAAAGACTTGGTTGGTAGGGTGGGAGTGGTTTAGGCCTATTTGTAAATCTGCCACAAAAAAAGATACGTACTTTGAAAGATGTCTTGGAACATTTGAATGTTCTCAGATTTCTGGTTGTTAGGTGGTCATGTGTGGAAGTTATTAACTTTAATGTTTTTTGCCACAGCTTTTGCAACTTAATACTCAGATGAGTAACATTTGCTGTTTTAAACATTAATAGCAGCCTTTCTCTCTTTATACAG
Seq C2 exon
CTGTATTGTCTGAACTTGCATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAATTGAAGTAAACTTTTTGTTCTGGTCCTTTTTGGTCGAGGAGTTACAATACAAATGGATTTTGGGAGTGACTCAAGAAGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTATCAAACTCTAGCCTTGCTTGTTAAATTTTTTTTTTTTAATATCTGTAATGGTACTGACTTTGCTTGCTTTGAAGTAGCTTTTTTTTTTTTTTTTTGCAGTAACTGTTAGTTTTTTAAGTCTCTCGTAGTGTTAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTAAGAATCGAGTAATGGTGTAGAAACACTAATTCATAATCACTCTAATTGTAATCTGATAAAGTGTAACATTGTGTAGCCTTTTTGTATAAAATAGACAAATAGAAATGGTCCAATTAGTTTCCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTATTTCACGTTTTTGATCAAAAACTTTATTTGGGATATGTATGGGTAGGTAAGTCAGTAAGAGGTGTTATTTGGAACCTTGTTTTGGACAGTTTACCAGTTGCCTTTTATCCCAAAGTTGTTGTAACCTGCTGTGATACAATGCTTCAAGAGAAAATGCGGTTATAAAAATGGTTCAGAATTAAACTTTTAATTCATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420:ENSBTAT00000021838:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCAGCTGGCCTGGTTTGA
R:
AAGCAAGCAAAGTCAGTACCA
Band lengths:
352-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]