BtaALTA0008347-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13888184-13889468:+
Coord C1 exon
chr22:13888184-13888404
Coord A exon
chr22:13888707-13888868
Coord C2 exon
chr22:13888869-13889468
Length
162 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCCTTTCTCTCTTTATACAGCTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATCCCAGCTATCGTTCTTTTCACTCTGGTGGGTACGGCCAGGACGCCTTGGGGATGGACCCCATGATGGAACATGAGATGGGCGGCCACCACCCTGGTGCTGACTATCCAGTTGACGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCCCCGGGCGACAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAG
Seq A exon
CTGTATTGTCTGAACTTGCATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAATTGAAGTAAACTTTTTGTTCTGGTCCTTTTTGGTCGAGGAG
Seq C2 exon
TTACAATACAAATGGATTTTGGGAGTGACTCAAGAAGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTATCAAACTCTAGCCTTGCTTGTTAAATTTTTTTTTTTTAATATCTGTAATGGTACTGACTTTGCTTGCTTTGAAGTAGCTTTTTTTTTTTTTTTTTGCAGTAACTGTTAGTTTTTTAAGTCTCTCGTAGTGTTAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTAAGAATCGAGTAATGGTGTAGAAACACTAATTCATAATCACTCTAATTGTAATCTGATAAAGTGTAACATTGTGTAGCCTTTTTGTATAAAATAGACAAATAGAAATGGTCCAATTAGTTTCCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTATTTCACGTTTTTGATCAAAAACTTTATTTGGGATATGTATGGGTAGGTAAGTCAGTAAGAGGTGTTATTTGGAACCTTGTTTTGGACAGTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420-35-32,35-31,35-30,35-29-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCACTCTGGTGGGTACGG
R:
TCACTTCTTGAGTCACTCCCA
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development