BtaALTA0008347-2/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13888184-13889468:+
Coord C1 exon
chr22:13888184-13888404
Coord A exon
chr22:13888866-13888868
Coord C2 exon
chr22:13888869-13889468
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTGGTCCTTTTTGGTCGAGGAG
3' ss Score
3.62
Exon sequences
Seq C1 exon
ATCCCAGCTATCGTTCTTTTCACTCTGGTGGGTACGGCCAGGACGCCTTGGGGATGGACCCCATGATGGAACATGAGATGGGCGGCCACCACCCTGGTGCTGACTATCCAGTTGACGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCCCCGGGCGACAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAG
Seq A exon
GAG
Seq C2 exon
TTACAATACAAATGGATTTTGGGAGTGACTCAAGAAGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTATCAAACTCTAGCCTTGCTTGTTAAATTTTTTTTTTTTAATATCTGTAATGGTACTGACTTTGCTTGCTTTGAAGTAGCTTTTTTTTTTTTTTTTTGCAGTAACTGTTAGTTTTTTAAGTCTCTCGTAGTGTTAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTAAGAATCGAGTAATGGTGTAGAAACACTAATTCATAATCACTCTAATTGTAATCTGATAAAGTGTAACATTGTGTAGCCTTTTTGTATAAAATAGACAAATAGAAATGGTCCAATTAGTTTCCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTATTTCACGTTTTTGATCAAAAACTTTATTTGGGATATGTATGGGTAGGTAAGTCAGTAAGAGGTGTTATTTGGAACCTTGTTTTGGACAGTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420-35-32,35-31,35-30,35-29-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCAGCTGGCCTGGTTTGA
R:
TGTGCATTCTTCACTTCTTGAGTCA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development