GgaALTA0006295-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011905 | CTNNB1
Description
NA
Coordinates
chr2:43479100-43479891:+
Coord C1 exon
chr2:43479100-43479320
Coord A exon
NA
Coord C2 exon
chr2:43479791-43479891
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTGGTCCTTTTTGGTCGAGGAG
3' ss Score
3.62
Exon sequences
Seq C1 exon
ATCCTAGCTACCGTTCTTTCCACTCTGGCGGATACGGTCAGGATGCCTTGGGTATGGACCCTATGATGGAACATGAAATGGGTGGCCACCACCCTGGTGCTGACTACCCAGTTGATGGTCTGCCAGATCTTGGCCATGCCCAGGACCTTATGGATGGGCTGCCTCCAGGTGACAGTAATCAGTTGGCCTGGTTCGATACTGACCTGTAAATCATCCTTTAG
Seq A exon
NA
Seq C2 exon
GAGTAATAATACAAATGGATTTTGGGAGTGATTCAAGAAACGAGGAATGCACAAGAATGAATTGCAAGATGGAATTTATCAAACCCTAGCCTTGCTTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-30-34,30-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATGAAATGGGTGGCCA
R:
ACAAGCAAGGCTAGGGTTTGA
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]