GgaEX0017903 @ galGal3
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
NA
Coordinates
chr2:43478286-43480251:+
Coord C1 exon
chr2:43478286-43478346
Coord A exon
chr2:43479100-43479320
Coord C2 exon
chr2:43479630-43480251
Length
221 bp
Sequences
Splice sites
3' ss Seq
GCCACCTTTAACTTTCTTAGATC
3' ss Score
7.2
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACAGCGGATCTTGGACTTGACATTGGTGCCCAGGGAGAACCTCTTGGATACCGCCCAGATG
Seq A exon
ATCCTAGCTACCGTTCTTTCCACTCTGGCGGATACGGTCAGGATGCCTTGGGTATGGACCCTATGATGGAACATGAAATGGGTGGCCACCACCCTGGTGCTGACTACCCAGTTGATGGTCTGCCAGATCTTGGCCATGCCCAGGACCTTATGGATGGGCTGCCTCCAGGTGACAGTAATCAGTTGGCCTGGTTCGATACTGACCTGTAAATCATCCTTTAG
Seq C2 exon
CTGTATCATCTGAATGAACTTGCATTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTAGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAATTGAAGTAAACTTTTTGTTCTGGTCCTTTTTGGTCGAGGAGTAATAATACAAATGGATTTTGGGAGTGATTCAAGAAACGAGGAATGCACAAGAATGAATTGCAAGATGGAATTTATCAAACCCTAGCCTTGCTTGTTAAAAATTTATTATTTTTTTTAAATCTCTGTAATGGTACTGACCTTTGCTTGCTTTGAAAGTAGCCTTTCTTTTCGCAGTAATTGTTGTTAGGTTTTTTTTTTTAAGTCTCTCGTAGTATTAAGTTATAGTGAATATGCTACAGCAGTTTCTAATTTTTAAGGATTGAGTAAAGGTGTAGAACACTAATTCATAATCGCTCTAACTGTATTCTGAATAAAGTGTAACATTGTGTAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.884 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGACATTGGTGCCCAGG
R:
ACAAGCAAGGCTAGGGTTTGA
Band lengths:
308-529
Functional annotations
There are 1 annotated functions for this event
PMID: 18835279
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: isothermal titration calorimetry, x-ray crystallography. ELM ID: ELMI001576; ELM sequence: WFDTDL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]