BtaEX6093575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13887247-13889468:+
Coord C1 exon
chr22:13887247-13887307
Coord A exon
chr22:13888184-13888404
Coord C2 exon
chr22:13888707-13889468
Length
221 bp
Sequences
Splice sites
3' ss Seq
GTCACTGCCCCAACTCCCAGATC
3' ss Score
7.69
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACTGCTGATCTTGGACTTGATATTGGTGCCCAGGGAGAACCTCTTGGATATCGCCAGGATG
Seq A exon
ATCCCAGCTATCGTTCTTTTCACTCTGGTGGGTACGGCCAGGACGCCTTGGGGATGGACCCCATGATGGAACATGAGATGGGCGGCCACCACCCTGGTGCTGACTATCCAGTTGACGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCCCCGGGCGACAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAG
Seq C2 exon
CTGTATTGTCTGAACTTGCATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAATTGAAGTAAACTTTTTGTTCTGGTCCTTTTTGGTCGAGGAGTTACAATACAAATGGATTTTGGGAGTGACTCAAGAAGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTATCAAACTCTAGCCTTGCTTGTTAAATTTTTTTTTTTTAATATCTGTAATGGTACTGACTTTGCTTGCTTTGAAGTAGCTTTTTTTTTTTTTTTTTGCAGTAACTGTTAGTTTTTTAAGTCTCTCGTAGTGTTAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTAAGAATCGAGTAATGGTGTAGAAACACTAATTCATAATCACTCTAATTGTAATCTGATAAAGTGTAACATTGTGTAGCCTTTTTGTATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420-'34-29,'34-28,35-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.870 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATTGGTGCCCAGGGAGA
R:
ACAAGCAAGGCTAGAGTTTGA
Band lengths:
302-523
Functional annotations
There are 1 annotated functions for this event
PMID: 18835279
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: isothermal titration calorimetry, x-ray crystallography. ELM ID: ELMI001576; ELM sequence: WFDTDL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]