DreEX0024847 @ danRer10
Exon Skipping
Gene
ENSDARG00000014571 | ctnnb1
Description
catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
Coordinates
chr16:6281340-6284738:-
Coord C1 exon
chr16:6284678-6284738
Coord A exon
chr16:6282325-6282550
Coord C2 exon
chr16:6281340-6282133
Length
226 bp
Sequences
Splice sites
3' ss Seq
TCACTCCCCTCGTCCTCCAGACC
3' ss Score
10.1
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
ACTGGAGATCTAGGGCTGGATATCGGTGCACAGGGAGAGCCTCTGGGCTACAGACAGGACG
Seq A exon
ACCCAAGCTACCGCTCCTTCCATTCCGGAGGTTATGGGCAGGACGCCATGGGAATGGACCCCATGATGGAGCACGAGATGGCCGGGCACCACCCGGGCCCTGATTACCCCGTAGACGGCCTGCCTGACCTCGGCCACACCCAGGACCTGATCGACGGCCTCCCGCCAGGCGACAGCAATCAGCTGGCCTGGTTTGACACCGATCTGTAAATACAATGACTTTTTAG
Seq C2 exon
CTGTATCGTCTGATCTGAATGAACCTGCATTGTGATTTTGGCCTGTAGAGTTGCTGAGCGGGCTCAAGAGAGAGTGGGCTAGTTTCTCTGAAAGTGCCTGACACACTAATACAAGCTGAGTTTCCTATGGGAACACGTGGAAGTAAAACGTTTGGTTCTGATCCTAGCCGGTCAGAATTTTTGGTGTGATTGACAGAAGAAAGCCCAAAAAAAAAAAGAAGCAAATCCTAAGATGGAGTTTTCAACCTTAGCCTTGCCTGTACTTTTATTTTATTTTTTCTTACTTTTTATTTTTCAAAGGATATCTGGGTCTGTAATGGTACTTATCTAGCTTGCTTTATGATACTCGTCTTTTTATTTTGCAGAACTTTGTATTCCTTTCGACTGTCTCTCTTTCTCTCTCATAGTGTTGAGTTCTAGTGGTAATGATCCATCAAGATTTTATCGACTTTATGGTGTAGAACACTAATTAATCAGTTGAATTGTATTCTTATCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014571_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.913 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATATCGGTGCACAGGGAGA
R:
ACAGGCAAGGCTAAGGTTGAA
Band lengths:
305-531
Functional annotations
There are 1 annotated functions for this event
PMID: 18835279
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: isothermal titration calorimetry, x-ray crystallography. ELM ID: ELMI001576; ELM sequence: WFDTDL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]