GgaALTA0006295-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011905 | CTNNB1
Description
NA
Coordinates
chr2:43479100-43479891:+
Coord C1 exon
chr2:43479100-43479320
Coord A exon
chr2:43479630-43479790
Coord C2 exon
chr2:43479791-43479891
Length
161 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTTTTTTTCTTTCTTGCAGCTG
3' ss Score
13.25
Exon sequences
Seq C1 exon
ATCCTAGCTACCGTTCTTTCCACTCTGGCGGATACGGTCAGGATGCCTTGGGTATGGACCCTATGATGGAACATGAAATGGGTGGCCACCACCCTGGTGCTGACTACCCAGTTGATGGTCTGCCAGATCTTGGCCATGCCCAGGACCTTATGGATGGGCTGCCTCCAGGTGACAGTAATCAGTTGGCCTGGTTCGATACTGACCTGTAAATCATCCTTTAG
Seq A exon
CTGTATCATCTGAATGAACTTGCATTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTAGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAATTGAAGTAAACTTTTTGTTCTGGTCCTTTTTGGTCGAG
Seq C2 exon
GAGTAATAATACAAATGGATTTTGGGAGTGATTCAAGAAACGAGGAATGCACAAGAATGAATTGCAAGATGGAATTTATCAAACCCTAGCCTTGCTTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-30-34,30-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATGAAATGGGTGGCCA
R:
ACAAGCAAGGCTAGGGTTTGA
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]