GgaINT0093140 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78508469-78510327:+
Coord C1 exon
chr2:78508469-78508559
Coord A exon
chr2:78508560-78510187
Coord C2 exon
chr2:78510188-78510327
Length
1628 bp
Sequences
Splice sites
5' ss Seq
AAGCTACAT
5' ss Score
-0.41
3' ss Seq
AGAGCATTTTAGCTTTCCAGGAA
3' ss Score
0.73
Exon sequences
Seq C1 exon
ATAGAACGCATTGACAAATTCTTGGACCCAGGAGGTCTGCGCCATCTGATGTTCTACTATCAAGATGTGGAGGCAACCGACATGGGTAAAG
Seq A exon
CTACATAGGGTTTACTTCAACATGTTGTGTTTCTTCTGAGTAGGTGTGCAAAGGAAAAAAAAATTGCTGACATTTTTATTAACTGGGGCTTAAAGTGAGTCAAGTTTGGTCACCCAGGAATACCTGTTCTTGCTCATGAAATTAGGACTGATGAATTACTGAAGCTTATTAGTGCACTTCTACATATGGCTAGTATGCAACATCGAGGAATTGTTTTTCGGTATTTAAAGGGCAGCTTTCACATGAGGTGAACCATGACATGAACTCTACCTCCTCCCTTCCAGTCAAACCATCAATTTGTCCTGGAAGCCCTCCCCATTTCTTGGCACATAGCCATCTACTCACATAATCATGTCACTTGACAAACTGCTTCAGGAGGCCCCTGTTTAGGGTCACAAGGCCTCTTCTTTCACTTCTGCTCTCATCCCCTTCCCCTGGACTCCCCATTTTACCACAGTTCTTGGGGAAGCCTCCTTATCACTTACCCTGGAAGCATCTTGTGACTCCTGTAATGATGACATCCTCCCTTTGCTCATTGCTTCTGTCACAGAGCCTCCAGTGCTGTTCCCACTGGAAGAGCGTTAGAGCTTTACTTATTTACCCTAGATGTACGAGGAAAGACACAGCTGTTAACGTGCATGCTTTAAACTTTCTGGCTCACCCATTCAACTGTCCTAGTGTTGGTTTATTGCCAGTCTTTGACATGTCCCGAATGTTCTCCGGTTGCTACCTAAATTTCTTTCAGAAACACTGACACATAGGTAATACACACTTTACAGGTCCTTGTTGCTGTGGAGATCATCAGACTGAACAAGGAAGGAGGAGTGGCACTGTTACATTTTGCCTTGGTTGGATGTTGTCCTTTAATTACAGATACCAACAACTATTTGTAAAAATCTTTCTATTATTACAGTGATTCACTGAAAAATAAGTGTGTGTGTGTGCACATATGAATTTTTCTCTGAGGCAACGCTCGAAAACCATTAACAAAAAAAATAATGTGGTCAAAACCCAGACAATTTAAGATAAGACACTGCTACTTCTTGGTGGCTCTTTGCAAATGTTACCAACAGCATAAACCTGTGAGCAGCATATTCGTGTCTGGGGAAGAAGAAAAGGCAGGAAAGCCCTTTGTAGCTCCTTCATTTATTTTCCCCCCAAGAATCTTCTGTGGCATGACACTTCTCATTTCCAGAAATGCTCCTATTTTTTTCTGTATTAGACTTAGGTCTGCATTTTCTTAAGGAAAGACTGTTGATTACTGTTCATTTGAGGTAAACTACATTTGCTGATTTTTTTTTAAGCAATAGAGCATTATCTGCAACTACACAGTGGAGAGGGATTGCTATGCAAGAGCACCTTGACCCTGAACCTTTTATTAGAATGAGCAGAAAACAAATAAATGAATAGAAAGAAAAGGCTTTTGATATGAAAATGGCAAAATGAGATGAAATAATTCTAATGGTGCTCTGAGGACTCTGGGTGCATTCATTGGGAAGTCATGTGGTGAAGCACCAAGGGACTAGGATTCATACATACACAATTTAGGAAGATTTTCTTTGATTAAATAATAAGTGTTTATTAAATATTTGTTGTATTTCAACCTACAGAGCATTTTAGCTTTCCAG
Seq C2 exon
GAATTAACTCTCACTTGACAAAGAAGAAGAAACCGAAAGTATTTGTGACAGAGGGGAAGGAAGTTGCTTTAACTGGTGTATGTGTTTTCTTCATTAGATCTAGTGTTCTGAAAGCCATCACAGCTGAGAATATCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAACGCATTGACAAATTCTTGGA
R:
TGATAGATATTCTCAGCTGTGATGGC
Band lengths:
230-1858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]