HsaINT0049757 @ hg19
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13923389-13928287:-
Coord C1 exon
chr5:13928203-13928287
Coord A exon
chr5:13923550-13928202
Coord C2 exon
chr5:13923389-13923549
Length
4653 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AAATTATTTTGCTTTTGTAGGAC
3' ss Score
8.91
Exon sequences
Seq C1 exon
ATTGAAAGAATTGATCAACTTTTTGCTGTTGGAGGTCTCCGACACCTCATGTTTTACTATCAAGATGTGGAGGAAGCAGAAACAG
Seq A exon
GTATCTGAATTTGATGTGACATAACCCAGAAATGTGTTATTAGATTTATCTGAGGGTAGCTTGAAGAAGAAAGCTACTGTGAGAACGGACCTGTTTCACCTTGCGGGCGGGAGGGAGATGCGTGTGTGGGTCCATGTGGGAAACCATTAGTGTGTAGGGTGTGGCCCTGTGGAAGAAGTTCTGTTTCACCTCAAGGATGGAGGACAGATTACAGTTGGTATTTAGCCTGGTTGTTCTAACTTTATTGGAGTTGTCTCATATTCCTTCTCAGGCTGTGCTGGCAATGAAGATAATAAAGTAGATTACGTTTGACTTCCTTTTCTTATATTCTAGTTCATTCTGTGTTTTATGTTCTAGAACTTATAATGGGCACCTGTTTCACATGTATATAGGCATTATTTCTTTTTAACATAGGAATTATTGCCAGCATGTGTAACACCCCTTTTTAGTTAGCTATCACATTGTGTTAATTTTCTACTGACTCTGCTTTAAATAAATAATATTGGATGACAGGTTTCATCATTCTCATTTATGAAAAATTTGCAAATCTTTTTTTTGTTGTTGTTATTTATTATTATTATTTTTTGAGACAGAGTCTCGCTCTGTCACCAGACTGGAGTGCAGTGGCACAATCTTGGCTCCCCGCAACCTCTACCTCCCGGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAAGTACAGTCCCAGCCTGTAGCTGGGACTACAGGTGCGCGCCACCACGCCCAACTAATTTTTGTATTTTCAGTAGAGACGGGGTTTCAGCATGTTGGCTAGGATGGTCTCGATCTCTCGACCTTGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATATAGGCGTGAGCCACCGTGCCTGGCCCAAATTTGCAAATCTTTCTATAGATTCAACTGGCATAGTCTATTCTACTTTTAAGTGGATTAATGTAATTTTAAAGGCCTAAGTAGGAAGATAAGTCAATATCTGATTAAATGTATTATTTAATATATTAAAATATTATATACATCCTTTTTATGACCCATTTGATAAAAGGGAAAATAGCTATTGCTCTTGGCATATAGTAAGACTATACTTCTTTGTTTAAAAACTGAAGAAATTATGCATGCAAATTCGAACTGGCATTTTCTCAAAGCTGTCAATTTGATATTTTGTGCTTAGAAAGCTTATTACATTTTAAGTGAAAAATCAAGAGATAGAAGGTTTGGTTTCTACACCAGATTGCAAAACATAAGCTCAAATGAAAGATCAAGTTTATCCATGAACGGAGCACTGGATGAAACTGGCCTTCTGCGTAAATTTTACTTGGACCAAGAAGTGTTCGTAGGATGTAAACATAAAACCAAGTTTAACCTTTAAATCTTCTCACTGGTGATAGTCCTTCTGAACTTGGATTAGAATGCAAGCAATCCTGTGACTTTCCTGGATGTTCTTAGATTACAAAAAATTCTATAGTCATTTCAAATTACAAACACAACCTTAACTCAAAAAGCAAAACTGTCCAGTTGATGGAAAGCGAAATATTCTTCCCTCCTCATCCTTGAACCTCCCATTTCTCTGAAGGTTGAACTTCTCAGTAGGAGAAGAGGGAGGACCATGTGCTTTTCTCCCTACCTTCGTCTTCTACCCCTTGTCCACATCAGCTTAACTAAAGTGGCTGACTGTGTGAGGCCAGAGGCAGGGCAGAGGTAAGAGGGAAGAGGGGCAGGAAAATTTTTACTGGACTAGCGCTGTCATGAGCTGCTGACCTTGCACTCTTACCTTGCTCTTGTGGGCACGGTGGTGGTTTCTCCCGAGGTGACAGGCTGTCCTGATGATGGCCTCTGAAATTTGGTAGTCTAAGCCACCAGTCTCGCTCACTCTGTCCCATCCTCCCTCAGGTGCTCCTTTTGAGTAGGATTTAAGGTGGCTCCAGTCTGGCTCTTTTCAGCAGGGGCCCCACCTGGGTTCCTAGGTCCCTGCCCTCCATGGTGGTGCTGTTAGCTCCCCGTGCAGTCCAGTTTCTCTCTATCTGCCTTATTGAGCACTGTGCTTAGATTTCTTGGTCAGGTGTCATATCCCAGTCATTTTGTTCCTAAACTCCAGGAGACATAAATCAAGCTCTTTAGGTGGTTGGGTTGAAGACCTTGTTTATTGACTGGAGTGACTGACTGTCCTGGTTGTAGCACTGAAAGTCCTGCATCCCAGCAAACCCCCCTGTCCTGGGCAAGCTGGGACAGTTGCAGTCTCATTCTTGACCTGAGGTAAAAGTAGGAACACTTTATAACCTCACCGTTTGCATAGCATGATATGGTTTGGCTCTGTGTCGCCACCCAAATCTCATCTTGAATTGTAACTCCCACAATTATCACGTGTCTTGGTAGGAACCTGGTGGGAGGTGATTGACTTATGGAGGCGGGTCTTTCCTGTGCTGTTCTGGTGATAGTGAATAGGTCTCATGAGATCTGATGGTTTGATAAGGGGAAATCTGTTTTCCTTGGGTCTTATCCTCTCTTTGCCTGCTGCCATTCATGTAAGACGTGACTTGCTCCTCCTTGCCTTCTGCTATGATTGTGAGGCTTCCCCAGCCACGTGGAACTGTAAGGCCAATCAAACCTCTTTCTTTTGTAAGTTGCCCAGTCTCAGGTATGTCTCCATCAGCAGCATGAAAATGGACTAATACTTAGCATAACTGTCCTCACAAAATCCTTCCTTAGTCTACACGCTCTTGACCCTTTTGCATTCTGATGGGGGCCAGGGAGAAGATGTCTAATCAGTTCTAGGACAACAGCTTTGAAATTTCTGCAGATTTTTTTTTCCTTTGAAATTCTGTTTTCTGATGTCTATCATGCGTTGGTGCCTTGGTTGAAACTTGTTGCCTAACATCTTATTACTCATGAGACCCAGGTGATATTAGCCAGGAGCGGGATGCAATTTTGAATGAGGGGGAGATTGATCTTCTAGTTACCTTTAATGAGGGTTCACTGTCCAAGCCACAGTCAAGGTCTCTAGCCTAGCACCATGGGAGGAAGATCCCTGAGGGAGGATTACTCCAAGAGGTTCCAATCCCAGGATTTTAGGATTCAACTTCTGGTCCACTCCCCATCCCAAAGTCCACCATTAGCGCCATCCTCCCACTGCAGTGATCCTGATTGAGCTACCGGTCCATTTGGAGATCTAAACATTTCTTGGGCAGGTAAGAACACAATGAAACAGCTCAGAGTGTATTCTATGTACTTAAATTATCTACTCAATGAGCCACATGCTTGGATAATCAAAGATGACTGTTCAAGTACTGATAATAATAATGCTTACAGAGGCTAGTATTCTTATGTGCTTTTCTAAGGACTTTACACAGTGTGTTGATTTTCACAACAATTTCAGATGCTAAGTTCTAGTATCATTCTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCTCAGCCTAGAGTGCAATGGTGTGATCTTGGCTGACCACAACCTCCATCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCTGGCTAATTTTGTATTTTTGGTAGAGACGGGGTTTCTCCATGTTGATCAGGCTGGTCTCGAACTCCCGACCTTAGGTGATTCACCCGCCTCGGCCTCCCAAGGTGCTGGGATTACAAGCATGAGCCACCACGCCCGGCCATATTATTCTCATTTTTAAGATGTGAATATGAGAAAATGGAGGCACAGAAAGATAAAGTAACTTGCCAAGGTCACGTGGCTGGGAGTGCAGCCTGAGATTGAAGTTCTGAGAATCTGACTCTAGAGCCCACATTGTTAATCATTAAGTGGTCCTACCTCTACAAGACCCTGACTGCAGCAGTATTTGAAATATAACCAGGTATGCTGACTATGACAGAGTAGGGACAGCATGGGGAAGTGGGGGTTCCGAGTTTTGTAGTCAGAGCTGGTTTTCGACCTTGGCTCTGCCACCTATTGGCTGTTTGACTTGGAACATGTCACAGCTGCCTCAGAGTTGTTTTTGTTTTTCAGACTGAGTTTCGCTCTGTTGCCCAGGCTGAAGTGCAGTGGTGTGATCTCTGCCCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACGACCACGCCCAGCTAATTTTTGTTTTTTTTTAGTAGAGACAGGGTTTCATCACGTTGACCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCTCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACCCAGCCGGGTTGTGAGTTTTAATAATGTACACAGGGTACCTAGCAGAGGGTCTGGAACACAGTACATGCCAGTAGATACATTGTCCTCCTTCCCTCTTTTCACTGCCCCTGAAACAACAGTTTTGAAGTGAACCTATGATCTGGAATCAAACAGATTTTTTAAGATCCCTGTACGGCTCATGCTAGAGATTGTTCAAGAGGTGGACCCATCTAAGGCACATGGACAAGTCAACAATGGCAATATTTTAACAAGGAAACTTCATTCCAAAGGGAACCACATGGACTGCAAAAAGCATTTGTGAAACTAAAATTATTTTGCTTTTGTAG
Seq C2 exon
GACAACTTGGCTCTCTAGGAGGGGTAAATCTTGTTTCTGGAAAGATTAAAAAACCTAAGGTGTTCGTGACCGAGGGAAACGATGTGGCTCTTACTGGGGTATGTGTGTTCTTCATCAGGACTGACCCTTCCAAAGCCATCACCCCTGACAACATCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-DNAH5:NM_001369:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)