GgaINT1011559 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76602538-76604396:+
Coord C1 exon
chr2:76602538-76602622
Coord A exon
chr2:76602623-76604238
Coord C2 exon
chr2:76604239-76604396
Length
1616 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
TGTTGTATTTCAACCTACAGAGC
3' ss Score
7.96
Exon sequences
Seq C1 exon
ATAGAACGCATTGACAAATTCTTGGACCCAGGAGGTCTGCGCCATCTGATGTTCTACTATCAAGATGTGGAGGCAACCGACATGG
Seq A exon
GTAAAGCTACATAGGGTTTACTTCAACATGTTGTGTTTCTTCTGAGTAGGTGTGCAAAGGAAAAAAAAATTGCTGACATTTTTATTAACTGGGGCTTAAAGTGAGTCAAGTTTGGTCACCCAGGAATACCTGTTCTTGCTCATGAAATTAGGACTGATGAATTACTGAAGCTTATTAGTGCACTTCTACATATGGCTAGTATGCAACATCGAGGAATTGTTTTTCGGTATTTAAAGGGCAGCTTTCACATGAGGTGAACCATGACATGAACTCTACCTCCTCCCTTCCAGTCAAACCATCAATTTGTCCTGGAAGCCCTCCCCATTTCTTGGCACATAGCCATCTACTCACATAATCATGTCACTTGACAAACTGCTTCAGGAGGCCCCTGTTTAGGGTCACAAGGCCTCTTCTTTCACTTCTGCTCTCATCCCCTTCCCCTGGACTCCCCATTTTACCACAGTTCTTGGGGAAGCCTCCTTATCACTTACCCTGGAAGCATCTTGTGACTCCTGTAATGATGACATCCTCCCTTTGCTCATTGCTTCTGTCACAGAGCCTCCAGTGCTGTTCCCACTGGAAGAGCGTTAGAGCTTTACTTATTTACCCTAGATGTACGAGGAAAGACACAGCTGTTAACGTGCATGCTTTAAACTTTCTGGCTCACCCATTCAACTGTCCTAGTGTTGGTTTATTGCCAGTCTTTGACATGTCCCGAATGTTCTCCGGTTGCTACCTAAATTTCTTTCAGAAACACTGACACATAGGTAATACACACTTTACAGGTCCTTGTTGCTGTGGAGATCATCAGACTGAACAAGGAAGGAGGAGTGGCACTGTTACATTTTGCCTTGGTTGGATGTTGTCCTTTAATTACAGATACCAACAACTATTTGTAAAAATCTTTCTATTATTACAGTGATTCACTGAAAAATAAGTGTGTGTGTGTGCACATATGAATTTTTCTCTGAGGCAACGCTCGAAAACCATTAACAAAAAAAATAATGTGGTCAAAACCCAGACAATTTAAGATAAGACACTGCTACTTCTTGGTGGCTCTTTGCAAATGTTACCAACAGCATAAACCTGTGAGCAGCATATTCGTGTCTGGGGAAGAAGAAAAGGCAGGAAAGCCCTTTGTAGCTCCTTCATTTATTTTCCCCCCAAGAATCTTCTGTGGCATGACACTTCTCATTTCCAGAAATGCTCCTATTTTTTTCTGTATTAGACTTAGGTCTGCATTTTCTTAAGGAAAGACTGTTGATTACTGTTCATTTGAGGTAAACTACATTTGCTGATTTTTTTTTAAGCAATAGAGCATTATCTGCAACTACACAGTGGAGAGGGATTGCTATGCAAGAGCACCTTGACCCTGAACCTTTTATTAGAATGAGCAGAAAACAAATAAATGAATAGAAAGAAAAGGCTTTTGATATGAAAATGGCAAAATGAGATGAAATAATTCTAATGGTGCTCTGAGGACTCTGGGTGCATTCATTGGGAAGTCATGTGGTGAAGCACCAAGGGACTAGGATTCATACATACACAATTTAGGAAGATTTTCTTTGATTAAATAATAAGTGTTTATTAAATATTTGTTGTATTTCAACCTACAG
Seq C2 exon
AGCATTTTAGCTTTCCAGGAATTAACTCTCACTTGACAAAGAAGAAGAAACCGAAAGTATTTGTGACAGAGGGGAAGGAAGTTGCTTTAACTGGTGTATGTGTTTTCTTCATTAGATCTAGTGTTCTGAAAGCCATCACAGCTGAGAATATCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCATTGACAAATTCTTGGACC
R:
TGATAGATATTCTCAGCTGTGATGGC
Band lengths:
238-1854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]