RnoINT0048966 @ rn6
Intron Retention
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80967264-80972725:+
Coord C1 exon
chr2:80967264-80967348
Coord A exon
chr2:80967349-80972564
Coord C2 exon
chr2:80972565-80972725
Length
5216 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
AGATTGTTTTGTATCTGTAGGGC
3' ss Score
7.34
Exon sequences
Seq C1 exon
ATTGAAAGAATCGACCAGCTTTTTGCTGTTGGAGGACTTCGTCATCTCATGTTTTACTATCAGGATGTGGAGGGAGCAGAAGCAG
Seq A exon
GTATTGATATTTGACATGATATAACATAGATACCATTAAATTCCTCTGAGAGTGGCAAAAAGAAGAAACGCAATGGAGGACTAACAGGCTTATGCTATGCTGGGTTAGGGGATCTGTGTATGTGTTGTGTATATGTTATGTAGTGCCTTTGTGATGTGTATGTGTGATATACATGTGTGAATGGTGTCCTTATGGTGTGTATGCATGGTGAGTGTGTATGCTTGTGTGATGTTTTTGTGGTGTGTACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTATACGGTGCCTATGTTGTGTTTGTGGATGTATATGTGTTGTGTTTGTTTATGTAGTGTGTGAGGTATGTTATAGTTAGGGTTTTACTGTTGTGAACAGACAGCATGACCAAAGGTAAGTCTTATCAAGGACAACATTTAATTGGGACTGGCTTACAGGTTTAGAAGTTCAGTCCATTATCATCAAGGCAGGAACATGGCAGCATCCAGGCAGGCACGGTGCAGGAGGAGTTGAGAGTTCTACATCTTTATCTGAAGGCTGCTAGTGGAAGACTGACTTCCGGGCAGCTAGGGTGAGGATCCTAAGCCCATGCTCACAGTGACACATTTACTCCAACAAGGCCACACTTCCTAATAGTGCCAGTCTTTGGGCCAAGCATTACACACCATCACAAGGTATATGTATGTAATGTCTTTGTAGTGTGTATGTATGGTGTGCATATAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTGTGGAAAGATGCCCATTTTCTCCTTCAGGTTAGGGGATGGAGAATGGTAGTTATCCTAGATGTTCGAATTGCTTTGTGTTCCTTTTGATTTGCCTTAATGACAATGGGGAACGGGGCTGGGGACAATCGGACAGATCTTGTTTTGAGACTTAGTTTTCTTTTGTGCTAGTTCCTTCTGTGTAACCATGTTCTAGAAGTTCCAGTAGGTATTGGGTTTTGAACAGAGGAATAACATGCTTGTCAATAAATGTAGCATCAACTTCTGTCAGTTAAATACCACATTATGTTTATTTACTGTGGGTTTTTATCAAAATGTGTAATGTTGAATGATGGATTTAATACTTACACTTAAGAAAATATTGTAAGTATATAAATTCAGCTTCTGTATCTCATTATGTTTTTATCTCATTATGTTTTTAATTAGATCAATATCATTTTAAGTCCAAAGTAGAGATATTACTAAGTATATTATGCTTATAGTATTATATTCACCCCTAAAGACCTTTAAAAATTGGAAATAGTTATTGATTTTGTCAGGTAGCATGAACATTCTTTGTTTCCCAGAGAATTGTTGGTGGATGGAGCTGGGGTAGATGCTTTGATTGGTAAAGTGCTTCCCACACAAGCATGGGGACCTGAGTTTTTATTTTTAGAACTCTTGTTAAAACACCCTGAAGCCCATAATTTCACCACTGGGGGGGAAGAAACAGGAAGATTTCTGGAGCTCATTGGCTGACTGGCCTAGGCAACTGGTGAGCTCTAGATTCAGTGAGAGAGCTTGACTTAAAGAACATAACAGCAATTAATTAATAAAGTCACTCTATGTTCTTTCTTCTCAGAGAAGGGGAGACCTCCCATGGATATCAATTTGCCTGGGCACATCAAGTTGTAATAGGACTGGGCAAATCTTCTTCTGTTGAGTCTAGACAAGGAAGCCCAGTAAAGGGAAAGGGATCCAAAGACAGAAAACCTGGGCAGAGAGGAGGGAGGGGAAGCTCTATAAAGGAAACAGATTAATTAATGAAAAACAAAAAGACACTCAATGTCAACCTTTGACTGTGTGCATATGTGTTCACACATGTGTGAACACTCATGCATGCATATTTATACACAACCATAAACACACACACAGAGTGAGAGTGAGAGACAGACAGACAGAGATTGAGAGAGAGAGATTGAGATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACATGTGAAAATCTTGGATGACTGACATTTCTTAAGTTATAAATTTGATTTTTTTCCACAGAAAGTGCATTACATTTTGAGTAAAAAGAATCAAAAGATAGAAGATTAGATTTTCATCTCACATTGTAGAACATGAGCTATACCAGGAAGCATGTTCTGTCATAACTATGCCCAGGGTGAAATTGCCCGTTTCATATAAATTGCACGGAACAAGAAGGGCTTATAGCTTCCCAACATATAAACAAGGCTTTTTGTTTCTCTTTCACTCTCTTTTTCAATCTTTTCGGCATGGATAGTTCTTCTGACCTTGGAGTAAGAATCAAGCCCTTGGATGACTTTTCTAGACATTCTTAAGAAAAAAAACCTTATGGTCATTTCAAATTGAAAACACAATATTGATTAAAACAACGAGAGTATCCAGTTGAGCAAAACGAGCTGTCCAGAAGTAAACTCACTCTTCTTTGCATTCATCTCTGTTTCCTCTGACCCTTGTCCAGGGCTATTGAAGGTCTCCACTTGCAGCATGAAAGAAACTCACAATTCTCCTTTGCTTCCTCCCTCCTCCTACCTCAGCCCAGGTACATTAGTGTCTGTGTCAGATCTGAGGCCAGGCACAGGCAGGAGGTAAGGGTGAGAGGGAAGTTTATACTTGACTGCTACTGCTGAGCTCAATGAGCTCTTGTGGCCATGGTGGGTCCCCATGGAGCAGTGGCTGCATAGCCTACAGGGATGTATTGTCCTTATAGAACTGCCTCACTGTTTCAGCGTGCCTAGCCTCTGTGCAATTACCTCTGCTTTGCACCTTCCCAGAATTCCTTTTTTTTAAAGATTTATTTATTGTATGCATGTGAGGACACTGTTGCTATCTTCAGACACACCAGAGGAGGGCATCGGGTCTCATTATAGATAGTTATGAGCCACGATGTGGTTGCTGGGAATTGAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTTTTAGCGGCTGAGCCATCTCTCCAGCCCTCCCAGAGTAACTTGGGCAATAGAAAGTGGTTGCATGGAACGTTCTCTTCTCAGAGATCTCTTCACCTAACTCAATGGAAGTACTTACCCCATTGAAGTAGTTACATCATCTCCCCAGTGGGCATTCTGTTAGCTCCCATCTCAGACCCACTCCTCTCTGTACGTTGTATGCTGGGTCTGGATTTATTGGCAACAAGCACCAGCTCATTGCATTCCTTAAGGTCCAGGAGGCATAAATAACTCCATCTTTCCAGGAGGTTGGATCGAAATCCTGCTCCTTACTGAGGTTGGCAGCTGTCTTCCCTTGCCTGAGACTTTTCTGGCTCTAGGACTGACTGGGAGTTCAGCATCCCAGGAAGCCTCTTAGCTCTGAGGCAGCTAGGACTCAGTTCTGAGGCAGCCTCCTTTCTGACTTGAAGCAAATGTGGAAGGATTTCACATTTCCTACGCATTGTTGCCCACATCCCAGATTTTCCTTGAGACTCTTGTTTTCTGCCATCTCCCATATCTCAGAGCCTTGGTTGAAATTCCTTGTCTTGTCTCCAATCTGCTAGTGAGAGTGTGGTATGAGGGGTGCACCTCATTTGAATACTTGGCTTTCCCTTTTCTGGGGATCCTTCACTAAATTCCTAGGAGGAAGCACCTAGAAGGAAGAGATGGCTTAGGGCTCAAATTACAATTGCCATTTCACTGCCTTAGCTCACATTCTTCCCTGAGCACCACCCTCTCTCTCAGTGGCAGTAAGCGGAACCTTTGATTCACTTAGGACATAGCATGCACTTGAGCACAAAGGGACAAGACGGAGCATGTTCTGTTGTACCTAACTGAGCCACTCTGCAGACAACACTCTTGGACAACAAACATGAGCTTTCTGATTTTTCTGATAATGCTTGATGAGCAAATATGCTCAGAGAATTTTATAAGTGGCTCACATACACAAACTCCTTTAATCATCACAAAAACTATCCTGCATGAATTCTACAAAACATGTTAAGTTAGAATAGCCTATCCTATTTTTAAACAATTCGAGAGGAGCTGCTGAGGTAAAGAACACTTGGTGCTATCGCAGCGGGTGCAGGTCAAGCCCTATGTGTCCATGTGGTGTCTATATATAGCCATCTACAAGTGACATCCAATCATCTGACACCTCTTCTGCCTCTCCGGGCACCAGTCACACATGTGGGAACATACAGGCAGGCAGAACATCCACATGCCATTCACAATTGGCCCATGATCACCACTAGTGGATCCTGAGAGGTAAAGCGGGGTAGGACTGCTGGAGCTTAGAGACCTCAGGTGAGGTGAGAACACTCTTGGGAGACAGATCAGTTTAATGTGGGGAACAAAGACTATTTAAACCTTTGGGTGGTGGTTAGGGGCTATTAGGGTAAGTGTACATCATTGGCTGGGGCCAGGGTGTCAGGGATGCTTCATTTGCATAAGGAGGAATTCCTGGTGGGTGCTGCTGGGAATAGCTTTATAAGGGAAGGGGGAGTTTAACCTGGCTACCTGTCCTTCTGGCCATCTAAGGGTGAAATTTCTAGGATTTCTACACACCTGGAACCGACTCTTGCTCCAGGCCAGCTTCCCCAGGTCCCACGGCTCCCTGGTCCCACACCCATACACATAAAATGGGAAATTATTAGGTAAGGTCATGCAGTTAGGAAACAAATGGAGGTTAAAGCCCTAGAATTCACCCTAGAGCAAGAACATCAGTTTCTTTGTCACCTTACCTCTCTGCCCAGGCCTGATGCTAGCAATATACAGAACTAACCCGCAGCCTGGGTTATGATGGTGTCGCTGAAGTGAGTCCTGAGTTTGTAGGTAAGGCTGGCTTTGGCCTTGCCTCTGCCATCCGTGGCAGCATAGGAAAGCTCACAGGTGCCGCCGGGTTGTAAGCATTTGTAGTGTAGGTATGGTGCCCAGGGGAGATTCTGGAACACGGTGTATGCCCATCAGTGATTTTTTTCCTCCCACCCTATCTCCACCCCAGTCTCTCTCACTGCCCTCATGATCTAGAACCCAGCAGACTCTTTTAGATCTCTTTCAGGATGAGACTAGAGATTATCCAAGTGATGGGTCTGCCTGACGGACACCGGCAGGTCAGCCATAGCAATTTCTAGAAGGAATCTTCATCCTAGGTGGCAACCCTGTGCACCACAAGCAGTGTTCGAGAGACTAAGATTGTTTTGTATCTGTAG
Seq C2 exon
GGCAGTTCGGCTCCTCAGGAGGGGTGAACCCTGCTTCTGGAAAGATGAAAAAGCCCAAGGTGTTCGTGACCGAAGGAAAGGATGTTGCTCTTATGGGAGCATGCGTGTTCTTCACCAGGGCTGACCCATCCAAAGCCATCACGGCTGAGAACATCCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363:ENSRNOT00000074689:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]