GgaINT0093176 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78547920-78549221:+
Coord C1 exon
chr2:78547920-78548098
Coord A exon
chr2:78548099-78549033
Coord C2 exon
chr2:78549034-78549221
Length
935 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AGTTGCTCTTTTCTTTGAAGGTC
3' ss Score
9.05
Exon sequences
Seq C1 exon
ATGTTACATCACTCTGGCTCAAGCTTTAGGCATGAATATGGGTGGAGCACCTGTGGGGCCTGCAGGAACTGGTAAAACTGAAACCATCAAAGATATGGGACGGTGCCTTGGTAAATATGTAGTTGTCTTCAACTGTTCAGATCAGATGGATTTTCGAGGACTTGGGAGGATCTTCAAAG
Seq A exon
GTAAGATGTGGGCTATATGAGTTACAGATGCTCAGAGAATAGCTTTATGAATCAAGATCAACACGTAATCAGCAGTTGATTCTCTGCCTTTTAATAACTGCAAGTAATGAATACCTTGTTAATATAAAACACCATTGCAACACTCCAAGAAATAGAAGTGTCTGGAAAGATTAGACAGTTTATGAAAGGATATATAAATATTTTTCAAATAATCTAGGAGGATTGCCAGTACAAAAAGAAAAAGCTGTGTACTAGTAGAATGTGTTGGTTTCTGATTTCATTTTTTTTCTCCTTACAAATATCAAAGTTCTTATCAGTTGAAATAAATGAATGAGTAGCAGTATATATGCTTAAAACAACTCTTGGCATAGCTTGCTGATGGTAGATAGAAACAAGAATATTTCTAGGCACCAGAAGCTGATATCTGTCAGTGATTGCAGATGACATGTTAGAGATCATATGGAGGTCCTTGACTGTTTTCTTGTTGCAACTTTGATGATGATGATGATTCCCCTCTCCTGAAAGTACCTGAAGAAGAATGGAACATGGGCACAGAATGACTCCCAGCTTTTTTTTCTGCATGAAACTGACTTTGCTGTTTATTTTAATCAGAAAAATAAGCCATTGATATCCTGTCATATTTTGAAAGATTTATTGCAGGGATTTTCTTTGGGTAGAGAGAAACAGGAAAGCATTGAAATACTGATAGAAGAAGCAGGGATCTAATCATGCTGTGTCCTAGAAAAGCTTATAGATTTTTGAAAATTTGTACATTCTTGCTTTAAAAAGTTACTCTTCTTCTTTTCCTTTTCTCAATGTCTCAACAGATTTATTTATTTTTTCCTGAGCAGATGAGCATGAATTTTAGTGGTTAAATTACACCAAAAAGATTACCAACATTCTGGACAAGTACTTAGTTGCTCTTTTCTTTGAAG
Seq C2 exon
GTCTTGCTCAGTCTGGCTCCTGGGGTTGCTTTGATGAATTCAATCGTATTGATTTACCAGTATTATCAGTAGCTGCACAGCAAATTGCAATTGTGTTGACGTGCAAGAAAGAACATAAGAAAAGCTTTGTTTTTACTGATGGAGATAATGTGGAAATGAACCCTGAATTTGGCATCTTTCTTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
NA
C2:
PF127742=AAA_6=FE(26.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGCTCAAGCTTTAGGC
R:
GCCAAATTCAGGGTTCATTTCCA
Band lengths:
342-1277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]