MmuINT0050920 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28256275-28257133:+
Coord C1 exon
chr15:28256275-28256453
Coord A exon
chr15:28256454-28256945
Coord C2 exon
chr15:28256946-28257133
Length
492 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CATTTAATTTCCTTTCTAAGGAC
3' ss Score
8.25
Exon sequences
Seq C1 exon
GTGCTATATCACATTGGCTCAAGCTCTGGGCATGAGCATGGGAGGAGCCCCTGCTGGTCCCGCAGGGACAGGCAAGACAGAGACCACCAAGGACATGGGCCGATGTCTTGGGAAATATGTTGTAGTTTTCAACTGCTCGGACCAGATGGATTTCCGAGGACTTGGGCGGATATTCAAAG
Seq A exon
GTGAGCACTGTGCTTTTTTTCAGTGACTGAGAAATTTCAGATCAGGTGAAATTTCTTGCTAAGATTTATCTCTTAGGATGGTCAGTGCAGCTTCCTGGTGGCACATGCTTAGGCTACAGGGCAATTTGATTCAGTCTGCAGCAGCAATAACAGCCAAATATTTGTATATTTTTTCAAGAGCTGGATACATCTCAGTGTCACTTTTTCCGGTTTGTTTTATTTGACAAGCTCAGTCTTAGCGGCACTAGGTGGATGGGAGGCTCATGTAATTTCCCCTTTGTAAAGCACTTGTCGTCAGTAATACCGTTGGATGTTTACAGACAGCCTGCCAACATCTTGACTGCTTGGGGCCTCTGGATGCACCATTTATTTTCTAACTCCAGTTTTGAATAAACCGATCTCTGGTTCACTTTGGCAGCTGTGTAATATCCGTTTTCTTGGTTTTCAGACATGATGTACTAATTGGATTTTCCATTTAATTTCCTTTCTAAG
Seq C2 exon
GACTGGCACAGTCTGGGTCCTGGGGTTGCTTTGATGAATTCAACCGTATCGATCTACCAGTTCTGTCAGTTGCAGCCCAGCAAATCTCCATTATTCTCACGTGTAAAAAGGAGCATAAAAAATCTTTCATTTTTACTGATGGAGATAATGTGACCATGAACCCAGAATTTGGACTTTTTCTAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
NA
C2:
PF127742=AAA_6=FE(26.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATTGGCTCAAGCTCTGG
R:
TCCAAATTCTGGGTTCATGGTCA
Band lengths:
344-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: