GgaINT0093182 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76649662-76651695:+
Coord C1 exon
chr2:76649662-76649808
Coord A exon
chr2:76649809-76651453
Coord C2 exon
chr2:76651454-76651695
Length
1645 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TCAATTATTTTGGACTGTAGGTG
3' ss Score
6.11
Exon sequences
Seq C1 exon
ATTGTGGACAGCCGCATCGTGAAATGAGAATGAATCCTAAAGCTATAACAGCACCGCAGATGTTTGGTCGTCTTGATGTGGCAACAAATGATTGGACAGATGGAATATTTTCCAGTCTCTGGAGAAAAACTTTAAGAGCCAAGAAAG
Seq A exon
GTATGACAAAAAAAGTGTAATAGTATTTAAAAACTCTCCATTCTAAATGCTTTATTTTCATACTCTGAAAAGCAAATACTGTTTCACAGAATTTGCTGATCCCTTTCTTTGAAATGATAGGCTTTTGCACAAAGGAAAAGTGGAAGATCAAAATCTCCTCCCCCAGCAGTGGAATGTGACAAAATTTTGGTGCTGTCATCATTTTCACCTGGTCTGAGGCTGCCATAGCAGAAGGGTGTGAATCTCCTTTGGTAGTGTCATATCTGGTAGCATGTATCTTAGTTCATCTCAAATGGCACTGGTAATTCCTTTTAGGCAATCAATTTCTGCCTGGCATATATAAAATAATCTTGCCATATTCTTAGCCTGCTATTTTAATTAAAGAAAAGATCTTGATAACTTGGTGCTACATAGATTCTTCTTTCTTTTGTCTGAATATTAGTATGTGACCTTATCATTAGGCCTATATGACTGAAGATGGAAATGAAAAGGAATAAAGAAAGAGAAAATCTAACATTGTTTATTCAGTTTTCCTACAAAGTTCATATTCTTTCAGTATACAGATTCCTTACAGTAGAAAAAAAATTGATTTAATTTCAATAGTTTTGTTTCAAATTTGGAAATGTAGTACCCTTGAGAATGTAGCATGGCCTTAACTGTTGATTCTGTTTTTCCCCTCAGCATGAAATATTAAGTTAGCACACTCATGTGACTTTCTCAATAAGAATCACTATTTGCAATACTTCTGTAATGCATCTTTATGAAATGAACTCCAAAACATCTCATGCCTGAGAAGCCTTCACTGTAGCTATGAAAAAACTATAAATACAAAGGTATTTGGCTCAGAGGTGAGGAGGTTACATCTTGGTTTGTGTCTAGCAATACAGCACCTAGGTGTAGGAAGTAAGGACTCTGAAGGCAGATGAAAGTGGGATGATCTCTGACTGCACAGCCATCTGGAAATGCCCAGCAGGGCTGGCAGCCTAAGAAGTGGGGAGCTGGAAGCCAAGCTGCCAGGGCAAGAGTGTTGCTCAAGTCATGCAAGCAGGACCTAGGCATTCCTAGGAAACACACACAGGTGCTGAGATACATTTCCAGTACTAAATGGAAAGAGCTTGAAAAACTTCAGAGGCAGCTGGGTTATGTTTAAGCATAGGAATAAAAAACAAGAATCTTGACCTCCATCAGATATGAAAGTAAGCACGTTACTTGAGAGAGGTGCTTTTCAGGTGTTTCTTTCATTTAATCTCAGTAGCATGTTGGAAACAGATGAATGTTGGTTTAAAATAGGTCTGTTGTTTCTATCTTTATGTTGCTTTCTGTAATTTGAAATAAACCCAATTTATTATTGAATTGAAGAATGAATCCATAAAACTATGTTTCAGACTACTACAGATGGATGAATTATACTTATGACACTTTTTATATACTGGGTAAAGGATAATTGTTATGGTAAGATGACAAAAACGAAGCACTTAACTGAAAGTGAGTAATGGGAATGGAAACTGTATTTAAAGATGAAATTGTAGCTGTGTTAATGAATTCAGAATTAGTTCAAAGTATATTTAAAGACAGAAGAAGCTGGTCCTTGAAAGAAACTGAAACTTCTTTCACAGGCATTTTTGTCAATTATTTTGGACTGTAG
Seq C2 exon
GTGACCATGTCTGGATAGTTCTTGATGGTCCAGTTGATGCTATTTGGATTGAGAACCTTAATTCTGTCCTGGATGACAACAGAACTCTAACACTTGCAAATGGAGATCGTATACCTATGGCACCAAATTGTAAAATAGTCTTTGAACCTCACAATATTGATAATGCTTCTCCAGCAACAGTCTCAAGGAATGGGATGGTATTCATGAGCTCATCAGTTCTCAACTGGAGCCCTATCCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(35.8=100)
A:
NA
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCACCGCAGATGTTTGG
R:
TCAAGGATAGGGCTCCAGTTGA
Band lengths:
342-1987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]