MmuINT0050927 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28270036-28273431:+
Coord C1 exon
chr15:28270036-28270182
Coord A exon
chr15:28270183-28273189
Coord C2 exon
chr15:28273190-28273431
Length
3007 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TTGTCTTGGGTGACATCCAGGGG
3' ss Score
3.67
Exon sequences
Seq C1 exon
ATTGTGGAAAGCCTCACAGAGAAATGAGGATGAATCCCAAAGCAATCACAGCCCCACAGATGTTTGGTCGACTCGATGTGGCCACAAACGACTGGACTGATGGAATATTTTCTACCCTTTGGAGGAAGACACTGAAAGCAAAGAAAG
Seq A exon
GTAGAGGAATAAACATTATGTTAAGCATGCACTTCTAAACGAAATCATAGATGTCTGGATAGAACAAGCAGTGGTGCTGTGCCAAGACTAAGTAAAAGATTTTACTATATTTCTGAGTGTTGATGTAATGAAAGTTTTGATTAATACACTTAAACTTCACCTCTAACATTTTTGTTGCATTTCAATTATTTATTTTGTGCACATAGAGTGTGTGCATGCATGTGTGCACTTGTGTGTGTATATGCATATGCATGTGTACATGTGCATATGTGTATGTATGTATGTATGTATGTGTGTGTGTGCACATGTGGTGTTTATGTGTGTGTATGTATGTGCGTGCATGTGTGTGTATGCACAAGTGTGTGTGTGTATGTGCATAAGTCACAGTGCCTATGGTGAAGTCAGAGGACAGGTTTTATTTTATTTTATTATTATTATCTTTTTGGCTGCTGGGTCTGTCCTTCTGCCATATTGCTCCAGACAACGACATTTTTCTCTGCTGGCCTCTCCTGCTGGCTCTAAACGCCTCCTCTTTAAAGGATATTTGTTTTCTAAAACAATACTTACACATCCTTATAATATTTTAGAATAAAGTAGAGAAAAAGTTGTTAAGGAAGGTTGATAGCATTGAATAAGGTAATTTTTACTGTTATTATGGTCACTGCATAGTCTAAAAATGTAACATTTACCTCTATACAGCTTGTTCTTTTTTAAAAAAAACTGATTCTCCTATGAAATCATATAGAGAACTGAGCTTTTGGGGGGAAGAACATTATATCTACCCACGTGAGCTGGCAAATCTTTCTGTTTTGGCGACACTGGCACTGTACTGTTCAAGCAAACCTTTAAGGGCTGGCTATTCAGTCTGCATTGTCTCTTTTATAGACACTGTAAACAGAGCACAGTGTTCTCAGAATATCACCTCAGCTGGAAGCAATGGTAGCAGCTCACCTCTCATTGTGTGTTCTCACTTCTGAGAGAGAAAAGGACAATGGATAAAACCGGAGGAAAAGAACTCGGGAGGGAGGAGCTCTTGGCAGATCCTTCCTGCCTTCACTTTGGGCAGCAGACCCCTGCTGCCATGGATCTTAAGATAGCATCATCTAGAGTCTCTTGAAAAGGAAGGAGCCTGTCCTTTAACATGGGTCATCAAGAGACAGTGAAAATGCTCTTATTGGTACCTGTTATTTTTCCCGAAAATAAAAATTTGCTTCTAATATGTTCAGTAACCCAGCATAAATGTAGACATGGTGATGGGATTTTAACTCCTGGCATGCTCAGAGGGTATCTGCTCTAAAGAGGAGGCAAGCTTTGGCTTTCAAAGGGACCTGTGCTCGGGTCAGCATTGTACCTGTTGTTAGCTGAGTGAGTTTCATGAGGGATCCCAAGCCATTTAACCTCCTCACGGGGAGGCACAGTGGGGAAATGTTGTTAGATCTGTGCAGTGATCCGATTGGTGAGTACCAGAGGGAGACAGACAGGAGCAGGAGCTACACTCGAGGCACACATGAGGCATGTAGCCTTCACTTACACTTGCATTCTTGTTGAGACTTCTTCTGTTTGTCATTCTCTAGCTCCATTTATCTCCTTATGTGACTCCCATCAGGTTGGTCCCCGTTGTCTCCTGAGATAACATTCTGAAGGACTTTGGTGATTTCTGGCGTTTAAAGCACAGGCTGCCTTTTCTTCTCACTACACTTCTGTCTCCAGTGGTCTCTACAAAACTAGTCGCTCTTCCTCCTGAATCCTGCCTGCTTGGGCTCAGAGATTCTCCCTCCTGCAGGTTACCCTCCCACTTTCACCAGAAAGGATGTCTTTAAAAGGCAGAAGGGTGGAGGGGCACCAGTGCCATCCCTGGCAGAAATCTATGTGTTGCATGGTATCTGTTCCCAGGCCTCCTGTCTCTCTCTACATTTTTTTTTTTTTTTTTTTTTGGTCTAGAAGAAACTCATGCAGCCTCCATGGCTTTAAGGACCACTTGGAAGCTCAAGGCTTCTACATGTCTAACATCCAGTCCTGATTTATCCTTACTTCTCCGGTGGGATCTCTGCTGGGTCTGACCATATGCAAGACTGAATTTGCCTGCCCTGTCCCATGGTCTTCCCGGTTGCACTGACGTACTACCCCTTACCTCGTTAGTTAGGTCTGATTTCTTCCCATCCTACTGCCTTATTTTCTTCTCTTCATCCCATTTGGACTGCTGTAATACAACAGAATAAGCAAAATGCTCTGCAGACAACAGACAGGTGTTTAATTCGCACTGTTTTGAGGGCTCCCACTTTTTTTGATTGGATCCTTCCATAGATAGAGAGGTAAAGGGTTTTTTCCTCGTACCAGGACAGTAACCCCTTCCTGAACACCTCCCTTTATTCTCTGATCCTATGCTATTTAATCTTAGGGAATAAGAATCCAGTATCTCACCTTAGAGGGGACAAAGCATGAAGCCCACTTTATCACCTGAAGCTTGTTCCTGCTCCAGGGTCTTTGTACATCCTGTTTATAGATGCAGCATAGACAAGATCATAGATGCATCTAGATCTTTAAATCACCTCAGTCTTTTTGTAAAATCTTTCACTGACACTTTATCTACAATAGTGCCTCTTCTCTGAATCTGTTTAAAATTGCTCCTGTTGTTTCTCTGATTATTTGCCTGTCTGTCTTTCCCACATAGAATGTAAGCCCTCTGAAGCTGGTACAGTATGTCAGCCATTGTCACATCTCAGCCCTTAGAACAATGGTACATACAGAAGGGTGCTTAGAATTTGTCCAAGGATCGAAGAAGTTTTGGGTTTGGTTATGATTTGAACATTCCAGCCACTTAAGGAACTTAGAAGGTTCTTTGTTCTCATGCAACTTAGGCATCATCGAGAACCTTGTTTTACTTAAAATTAGCAGGCATTATATTCCTGTTCTTGAACTCTTGAGAGAGTTACAGTGCTCTCTGAAGCTTCATAGCTACTTACACAGGCACCTGTGCTCTCTTCCTCTTGTCTTGGGTGACATCCAG
Seq C2 exon
GGGAACATATCTGGATTGTTCTTGATGGTCCAGTTGATGCCATCTGGATTGAAAATCTGAATTCTGTGCTGGATGATAATAAAACCCTGACTCTGGCCAATGGCGACCGGATCCCCATGGCTCCAAACTGCAAGATTGTTTTTGAACCTCATAACATTGACAATGCTTCTCCCGCCACCGTCTCAAGAAATGGGATGGTTTTCATGAGTTCCTCAGTCCTCGACTGGAGTCCTATTCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(35.8=100)
A:
NA
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: