GgaINT0093214 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78608801-78609756:+
Coord C1 exon
chr2:78608801-78609004
Coord A exon
chr2:78609005-78609540
Coord C2 exon
chr2:78609541-78609756
Length
536 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TTTTATTTTTCACTTTGTAGAGT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGGATTTCCTGGAGTACTGTTTGTTACATGATAGGTGAAATCCAGTATGGTGGCCGTGTGACAGATGACTATGACAAAAGGCTGATGAACACCTTTGTTAAGGTCTGGTTCAGTGAAAAAATGTTCAGTCAAGAATTCTGCTTCTACAAAGGATATGGCATACCCAAATGTACTATGGTGGATCAATACCTTCAGTACATACAG
Seq A exon
GTTGGTAAATGAAATCTGCTTAACAGGAAGAAAGTGTTTCCCTTAAGTTTCTCACAAGTTCCCAAGTTCCAGAATTTTGTCTTTTGAGTTTATGTATTCTGTCTCCACAAGACTCTTTATTGCCTTCTAACTGTCTGCTTATCTGTTAGTGTGAGCAGTAGTTGTCGTTATCATCACATCAATATTCTTTTCTGTGATTTGCTGGAGGGATGTACTGGAAAGGATACAGTTATTAAAGAGAGTATAGAATGGAGTCCAGACATTGAGTACAATTTCACAGAAACAATGTTGAGATATGGCAGAACAAGCTGACTATTAAAATAGTGTACGGAGGTAAAAACTGAATTTATTGTTAACTTTAGTGTGACTTGAACTGTGACATAACAAATAGCTCAAAGCAAGATGTTTGCAGTAAATCTGTTTGAAGAGATCCATTCTCTTAATTGACCTTATATGACTTTTTTGTTCATTTTTAAGAATATAATTAGTATATAAATCTATCTCTAGTTGTGCTCTTTTTATTTTTCACTTTGTAG
Seq C2 exon
AGTCTTCCTGCTTATGACACACCAGAGGTATTTGGTTTGCACCCCAATGCTGATATCACTTACGAAAGTAAACTTTCCAAAGACATATTGGACATCATCCTCAGTATTCAGCCAAAGGACAGCTCTGGTGGAGGAGGTGAAACCCGAGAGATAGTTGTAGCCAGACTAGCTGATGATATGCTGGAAAAGCTTCCTGCTGATTATGTACCATTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:76
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCAGTATGGTGGCCGTG
R:
GCATATCATCAGCTAGTCTGGCT
Band lengths:
348-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]