HsaINT0049806 @ hg38
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13714405-13716690:-
Coord C1 exon
chr5:13716487-13716690
Coord A exon
chr5:13714621-13716486
Coord C2 exon
chr5:13714405-13714620
Length
1866 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CTGGGGTGTCTGTTGTTCAGAGT
3' ss Score
5.26
Exon sequences
Seq C1 exon
GGTGTCTCCTGGACCACCATCCGCTACATGATAGGAGAGATTCAATATGGAGGCAGAGTCACTGACGACTATGATAAGAGATTGTTGAACACATTTGCTAAGGTTTGGTTCAGTGAAAATATGTTTGGACCAGATTTCAGTTTTTACCAAGGATACAATATTCCAAAATGCAGCACAGTGGATAACTATCTTCAGTATATCCAG
Seq A exon
GTTTGTCAACTTCAGAATTTTATGCATAGAGCAAATATCTGTAGCCACTTGAGTTTTGGGTATTAATTACACTGTCTATATTGCTTTTACAATACATTTTAATGGTGATATATACTAATGCTTTTGCTGTGAAGGCTTTCTTCATATTTTTATACTCAATGGATGATTAAAATGTTTATATTTGTTCTGAGTGTGTGTTTTGTGTGAATCGTGTTTCCATCCCCCCTCTTTTTTAATGCCCCAGGGAGGAATTTTCTTTGAGGAAGATGATAGATTAGGCAGATTTAGAACTAGGAGACCTACACAAATCACCTGGAGTTCTCTGTCTGTGAAACTTCGGCTGCCACAGCAGTAGAGCAAAGGCAGCTTCTAGACCCAATTTGTTCTGTTTTCCAATCCATTTGACAAATCCCATGACATCTGTTCCTTAACCCTGGCCTAATGGACAGCCTATGGATATGTCCAGGAAGCTGCTTTGTGTAAGAACCTCCTCTAGGACAGGGTTTCTCAACCTTGGCACTATTGACATTCAGGGTTGGATCACTCTGTGTTGTAGGGGGCTGGCCTGTGCTGTTGAGCAGCATCCCAGGCCTCTATCCACGGGATGCCAATAACAACCCCATACCCAATTGTAAGAACCAAAAATGTCTCCTGAAATTGCCAAATGTCCTCTGGGGGGCAAAATTGTCGCTTGTTGAGAAGCACTGACATAAGAAGGAATAGGTAGATTTCTACAGGCAGTTTGGGAATAGGTGGGGAAAAAATTCTGATTTTCAAGGTGACTGCGTCTCCTTTCTCTATACCTAAAATTCATTATATCATTATTTAGCAGTCTCTTTGGTCTCTATCGAAGATTTATCTCAGAGTAAACAAACTAAAACATAACAGCCCCAGAGGGCTAAATTTATCAGTATATTTACATGTTGCTTTGATATACAAATGTAATGAGTTTATCATATATTACCGCCTCTGCACTTTTATTAATTCAAATCAGCAAATATATTTGTTTTACTGTACTGCATGTATCTTTAAATCATCAGCACTGAATAAGAAAAGTGGCCATGAAGGTATAAATTTGGGGGTGCCTGTACATATATTTTTATATATACCCCATCTCACAGTTTATTTGAGGTAGCTCATAAGAAGATATTATGCAAGAGGGAATAAAATGAGGGAGAAGAAGGGAGGGAAATACGAGTATGACTCAAATAATTAAGTTAAGGATAAGATTCATACATAGAAATATGTGTCAAATTGTCCGTAAATTTTCTTTTTTTTCAAACCGTTGGGGGATCTTTTTGCCTGCTTCTCCTGCTTCTGCCTGTGTCCCACACCATCTCTGTCTCTGTTTTTCTCTCTGACTCTGTTGCTTTCTCAGTTTCTCTCTTTTCCTAGTCTCTGTATTTTTCCCTGGGTGGGTATGACTCCCACGTGCTGCCTTTATTTGGACCACGATTACTAAAGCTGTCATTTCCTGGTATCTTCTAAACATAATAACCATTAGTTATACAACATTGATTTGGACAACTGGTTTGAAGTCTATTAGACTGTCATAAAGCAAAACACCAATCCACAGCTCCCTTTCTATCTCACATATTTTATAACAAGACAGTCTCTCTTGATTAAATTTTGTTTGAGGTGCAGACTGTAAAGAGCCATGAGCCTACTGTCTGTTTCTCAATGTTAATTGTTTTTTTAAAGGAAATTTGATTCTTTTCTGGAGAAATTATTGAGTTTGTAGCTTGACACCAATAAGACTTAAGTAAATGCATACCCTCATAGAAGCATTTTTGTTTCCTAAAATAGTGTAATTTAGACGGTGCTTATGTTGGCAGTCTGTGCTTATCTGGGGTGTCTGTTGTTCAG
Seq C2 exon
AGTTTGCCTGCCTATGACAGCCCTGAGGTGTTTGGGCTGCACCCCAATGCTGACATCACCTACCAGAGCAAGCTGGCCAAGGACGTGCTGGACACCATCCTAGGCATCCAACCCAAGGACACCTCTGGTGGAGGGGATGAGACCCGGGAGGCGGTGGTGGCCCGGCTGGCTGATGATATGCTGGAGAAGCTGCCCCCAGACTATGTCCCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139:ENST00000265104:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCTGGACCACCATCC
R:
GTCTCATCCCCTCCACCAGAG
Band lengths:
345-2211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development