GgaINT0094212 @ galGal3
Intron Retention
Gene
ENSGALG00000012821 | TUBB2B
Description
NA
Coordinates
chr2:67501027-67501497:+
Coord C1 exon
chr2:67501027-67501135
Coord A exon
chr2:67501136-67501386
Coord C2 exon
chr2:67501387-67501497
Length
251 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GGTGTCGGTTCCTCCCGCAGGTA
3' ss Score
10.99
Exon sequences
Seq C1 exon
TTCTGGGAGGTCATCAGCGATGAGCACGGCATCGACCCCACCGGCAGCTACCACGGCGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCTGCCG
Seq A exon
GTAAGTTTGGTCTGCATCCTCTGACATCCTTAAGTAAATAAGGCAGAAACGCCAGTTCATTGTAGCTGGGAAAATGCCTGGTAAGAGCTGCCATCTACTAGCGACTTCTAACAGAGCTTTGTTCTCAGAAGGGCTCTGATAGCACTGCAGTTACGATCCAGACAGTGCAACTCTCCAGTGAATTATGGAGAGGCTGCAGTGAGCACAGCAGTGCTGCGGGGCCATAATGCTGGTGTCGGTTCCTCCCGCAG
Seq C2 exon
GTAACAAGTACGTCCCCCGTGCCATCCTGGTTGACCTGGAGCCCGGCACGATGGACTCGGTGCGCTCCGGCCCCTTTGGACAGATCTTCCGACCCGACAACTTTGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012821:ENSGALT00000020914:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGAGGTCATCAGCGAT
R:
ACAAAGTTGTCGGGTCGGAAG
Band lengths:
215-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]