GgaINT0095208 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:336330-336598:+
Coord C1 exon
chr2:336330-336405
Coord A exon
chr2:336406-336439
Coord C2 exon
chr2:336440-336598
Length
34 bp
Sequences
Splice sites
5' ss Seq
CGAGTGGGC
5' ss Score
-0.18
3' ss Seq
ACACCCCATGCCCCGGGCAGTGG
3' ss Score
4.12
Exon sequences
Seq C1 exon
ATCTGCCCCAAAACGAGGGGACCTGCCCCGAAGCTAGCTCCCAGTCACCCCATCCATCCCCGTGCCAATGCTGCGA
Seq A exon
GTGGGCTCATGCTGACACCCCATGCCCCGGGCAG
Seq C2 exon
TGGATGGGCCCTGGACCCCATGGACCCCCTGGAGTGAGTGCTCAGCCTCCTGCGGGCCGGGCCGCCAGCGCCGGTACCGCTTCTGCTCTGCACATCCCGGGGTGCCCTGCGCAGAGCCACAGCCTCAGGAGCGTCCCTGCGCCCGGCAGCCCTGCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCATCCCCGTGCCAATG
R:
CGGGATGTGCAGAGCAGAAG
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]