GgaINT0095476 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:41557865-41559507:+
Coord C1 exon
chr2:41557865-41558432
Coord A exon
chr2:41558433-41559474
Coord C2 exon
chr2:41559475-41559507
Length
1042 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AAAAGACTTTCTGCCTTTAGGAG
3' ss Score
6.77
Exon sequences
Seq C1 exon
GCAGATGTTGTCTTTATAGTGGATACTTCAACAAGTATTGCCCAGGAAAACTTTCAGAAAGTGAAGAACTTCCTCTCCTCCTTGGTCTCAAGTCTTGACATTGGCCTTGACATGATCCGAGTTGGACTGGCCCAGTACAGTGATGAAGCTTACCAAGTATTCTTACTGAATCAGTATCTATTGAAAAGTGATGTTTTGGATCAGATTGGGAATTTGCCATACAGAGGTGGAGAAACTTACACTGGGAGAGCTCTGGATTTTGTCAGCACAAGGTATTTCACAGAATCTGCTGGTAGTAGAGCAAAGGGTTATGTCCCCCAGTTAGCCGTTCTTATCACCAGCGGAGAATCCAATGATGAAGTAGAACAACCTGCCAAGAAACTGAGATACAGAGGCATTTCTATTTATGTTGTTGGAATTGGTATCCAAAATACAACTGAGCTTCAGCAAATAGCCAGCAAACCCTTCCGTAGATATCTGTATAGCATTGGTAGTTTCGATGACCTTCCAGATCTCTCCACAAGACTTTTGCAAAACTTCTGCATTGCGATTGAAAGCCAGATACAAG
Seq A exon
GTAAGGAATTGTCCTTATGCTTGTGCCATTTCAGTTTTCTATTCCATGTAATTGTGAAAATAGAATGTAAAAATGTGGTCTTGGTTTTGATGTTATTTTGTACAACTGTTGCTGTCATGTATCTCCATTGAAAATAATGGGGCTAAATCCGAGTTAAGTCTTAGTTCAGGATGATGTTCCTGTTCTTTTAAACATGTTTCAGTACCTATCTATATGTATATAGTGTCAGTGAGGTTAAATTGTTAAAAACAAAGGTAAGTTTATGCTCAGTGCTCTCTGTAAGCAGAACCTTAATGGACTGCAAAGAAAATCAGAGTTGGATTTGCTGATTTACTGAAATACATTCAATTGCATCTCATTAGTGCTGGTAGAGCCATTAATAGAAAATTATTTCTTTTTATGTCATTGAACAGTTTCACAGAACTATTTGTCAAGCTATGCTTTTTGGACACTTCCTTAACGCTTCTAAAAACTCAGTTCAGAAAGAACATTCTAGGAGTGAGAAAAATGAAGAAAAGGCATATTTTCCAATCCTTTCAATATATTTTCTGAACAACAGAATTCACAGAAAACGAATTTTCTGTTCTGTAAAAAACTATCTGTCATTGTTGAACCATGAAAGAGGAAGGGATATAAAAAAAAAAAACACAGGTCTGGTAGCGAAACTAACATCAAAACAAAGGAAATAGAGTTTAAATCAGTAATAAATACTTAAAATATTAGGTGTAAACTATAGCTACATTATGTTGGTTTCTAGTTTTGTAGAGATCAGTATGGATAACTTTTAGTTTAGTACTTTTCTTGATGAGAAAAAGTTAGGGATTAGATGCTAATGTTTGTACTTATGCAACTGTCTCTAATCTCCTTTTCTATCATAAACTGTTACACTGAAAGACACATCTAGGCCCAGTTTCATTTTCCTTGCATCTGACTTCCCCTCCCAAAATGTGTGTCTCTTTCCATTGACTTTAAATGAAGTTAGAATAACTTTGTTTATGTCCTGGGGCTTCCTCTGATATTTGAAAAGACTTTCTGCCTTTAG
Seq C2 exon
GAGCAAGTCCTTATGGGATTGTTATTAAGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567:ENSGALT00000018866:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=92.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]