Special

GgaINT0095476 @ galGal4

Intron Retention

Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42138978-42139601:+
Coord C1 exon
chr2:42138978-42139028
Coord A exon
chr2:42139029-42139572
Coord C2 exon
chr2:42139573-42139601
Length
544 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGA
5' ss Score
0.49
3' ss Seq
AAAAGACTTTCTGCCTTTAGGAG
3' ss Score
6.77
Exon sequences
Seq C1 exon
GACACTTCCTTAACGCTTCTAAAAACTCAGTTCAGAAAGAACATTCTAGGA
Seq A exon
GTGAGAAAAATGAAGAAAAGGCATATTTTCCAATCCTTTCAATATATTTTCTGAACAACAGAATTCACAGAAAACGAATTTTCTGTTCTGTAAAAAACTATCTGTCATTGTTGAACCATGAAAGAGGAAGGGATATAAAAAAAAAAAACACAGGTCTGGTAGCGAAACTAACATCAAAACAAAGGAAATAGAGTTTAAATCAGTAATAAATACTTAAAATATTAGGTGTAAACTATAGCTACATTATGTTGGTTTCTAGTTTTGTAGAGATCAGTATGGATAACTTTTAGTTTAGTACTTTTCTTGATGAGAAAAAGTTAGGGATTAGATGCTAATGTTTGTACTTATGCAACTGTCTCTAATCTCCTTTTCTATCATAAACTGTTACACTGAAAGACACATCTAGGCCCAGTTTCATTTTCCTTGCATCTGACTTCCCCTCCCAAAATGTGTGTCTCTTTCCATTGACTTTAAATGAAGTTAGAATAACTTTGTTTATGTCCTGGGGCTTCCTCTGATATTTGAAAAGACTTTCTGCCTTTAG
Seq C2 exon
GAGCAAGTCCTTATGGGATTGTTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567:ENSGALT00000018866:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009223=VWA=PD(7.3=70.6)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]