GgaINT0096253 @ galGal3
Intron Retention
Gene
ENSGALG00000016037 | SPAG1
Description
NA
Coordinates
chr2:134073344-134075988:+
Coord C1 exon
chr2:134073344-134073508
Coord A exon
chr2:134073509-134075616
Coord C2 exon
chr2:134075617-134075988
Length
2108 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
ATGCCATTTCTTTTGTGAAGGTA
3' ss Score
6.29
Exon sequences
Seq C1 exon
AGCTATCAAGCCAGTGTTGATGATCTCAAGAAAGTACTTCTAATAGATCCAAATGTTCTTGAAGCAAAAAAGGAACTGGAGGAGATAACCCAACTGCTCAGCCTTGGCGGCGTTGCTGTTGCTGACTGTCAACAAAAGCAAAGGAAGAAAATAACCATACAAGAG
Seq A exon
GTACATCTGTTCATTTTTACAAGCAGGCAGTACAGAAGCCATACGTTTGAAAACATAACAGCAAAGCATTTGGGTTTTAGTTCTTAGCTCTACACCTGCTTTAGGCAGAGCTGTATTTTTAACATATTGGAGGATGCTCGCATATGATGTGTTCGTCATCCACTCTGTTCCGTAGTAAAGCTTTGTCTGCTTTGAGGTGCATTCAGAACCACAGCAGAAGTGAGAAAAGTACATTTAGACAGCAAGAAACTTCAGCATGTGCTCCTTGTAATCAAAAACTGCTAAGATTTTGAAATAGTAATGTTACAGGATATGGCTGTCCAACAGCAGTTTTGCTTTTGAAGTCTGAGCTACTCTGGCATCCTCTGGCAAAGGTGGTTAGCAATGTGCTGGCTGTTCTTGTGCTTGGTAGTAAAGCTACTGGTGTGAAGGATGAAATCCTTCCTTAAAAAGCAATGGTACGGGTGGAATATCTGCAGAGTCTGGCAAAAGAAATGCATGATTTAACATTATGTATTGGATCAAAATAATTGCTTTCCAGAGTTTTTTGAATTAAGTGGTGAAGGGATTTTCTCAATCACCTGATGTTTTCGATTGTAATTTCGAGGGTCCTTTGAGAATGTTTTTTTTTCCCCTTTCCTGTTTAAAATGTATAGTTTCCAGTCTATGCTATTGAACTGAGAACGTAATTTGGATTGTGCAGTTTCAAAATGATGGTGTAATGGAAATGGCAGTTACTACCACAGCAACGACTCGTTTTATTGATATGCTTCCCAGTGTCACAACTTTGTGGGATTTTATGTAACTGGTGTAAGCTGGGAATAGTGTTAGTTAAGCTGTGAGTTGTGACAAAGGGACTGAGAGTATTCAGAGGAGCTCTGGGCAGTGAATGCAGTGTCTGGAGACCAGCTAACTACATTACTGGCAGTGGTAATTCTTCCAGGGCTGGGGCAGGAAGCACTGATGTTTGCTGTCGTAATTGCAGCTGCCCCTTCAGGCAGCTTTCCCTGTCTTACCTACATGGGAATTCCATGCAAGCAGGCTGCAAAGAAAACAAAGGAAAATTTAATTAGAAAGAGATTTATCATTATTATTCCGTTTTAATCAAGCTATGATTTTATAGAATACAGCTAGATATCTCCCTTGTTACTAAGGATTATTTAAAAACAAAGCAAAAGCTTTATAAGCCCAATGCCTGCGGAAATGACTAAGCTAGCTCCCAGCACAGCACTGTAATGTGTAGTGCTGCATCTTCAGGCTTTTCCAAAAGCCTGACATGAAGCTTTTGGAGAGACTCTGTTCAGTGAGTTGTTTTGGTAGGTTTGTACTGACTCCACAGCTTCTGATAGTTTGAAGTGGACTTTAGTGAAAGTGGTTATGTAGTTGTAAATGTAGTTGGCACTGCAACAGGTTGCCCAGTGATGTGGTTGATGCCCAGTCCCTGGAGACTTTCAAGGTGATGCTGGATCAGGCCCTGGGCAACCTGATCTAGCTGTGGTGTCCCTGTTCATTGCAGGGGAGTTGACTAGATGGCCTTTAAAGGTCCATTCCAGCTCTGAGGATTCTCTGATAGTGGAACTCAAGGCTAATTTTCTAGCAACTGATGAAGCTTTGTACAGGCTGCAAGCTGGGGGGAAGTGGGAATACAGGCAGTTAGACCATGATGAGCCTTCTACTTCCACAACAAGTCCACAAACAGCAACCTGATGCAACTGGTGTATGCCTGTACTATTCTGAAGTCACAGCAGTGAAATGGAGCTCTAAATGAAAAGTATATGGAGACTAAAATTCAGTTCTGTTTGTGTTGTGTAACTTCACATTCAGTAGATGTGTACTGTCCTTCTTAGTTCTCTCCCAGTGTCCTTCATTGGTCTTTCTACAGCGGAACGCCAAGCAATGAAATGAAACCTACAATACAGACTTTTGACTAAGAAACCTTTAAAGATAAAGAAGGGTTGTACCATTCTGGGGGGAAGAAGGACACAGAGGAACATGGGAGCCTTTATTTTGTGAAGAGTAAAATGCCAGCTTTAATTTAGTGATGTTATTGTTGAATATACAGATGCCATGTATGGAATTATTGATCTGATGCCATTTCTTTTGTGAAG
Seq C2 exon
GTAACTGATGAACAGGAAGAGGGGCAGCTTGAGACAGCAGAAGATGTTGTGACTGACAATCTTAGCTCTAAAGAAGCGGTTCAGAAGTGTGTGCCATCAAGGACCTGTGAAAAACTGACCATTTCTGAACCATCCAATGCCTATGATTTTGGTCAGATTGTAAATGCAGTGAATGCCAGTAAGGATCAATCTGCTTGTGCAGATCTTCTAACAATTACTGATCCAAAAAAACTGCCAGTGCTGCTAAGTAACAAACTTGAAGGAGAGATCTTTTTGATTTTCATCCAGTCATTGGCACATTACATCCTTGGAAAAGATCCTGGCCTCGTATATCAGCATCTTTTCTACTTGAGCAAAGCAGAAAGATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037:ENSGALT00000025838:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0051523=TPR_1=PD(52.9=32.7)
A:
NA
C2:
PF138771=RPAP3_C=PU(86.5=66.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]