Special

GgaINT0097675 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr2:23552467-23552663:+
Coord C1 exon
chr2:23552467-23552520
Coord A exon
chr2:23552521-23552609
Coord C2 exon
chr2:23552610-23552663
Length
89 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
ATTCGTTTACTTCTACCCAGGGC
3' ss Score
6.43
Exon sequences
Seq C1 exon
GGTGCTCCTGGTCCTGAGGGAAACAACGGTGCTCAAGGTCCTCCTGGTGTCACT
Seq A exon
GTAAGTAACAGCCTTCACACAAATACAATTTCTGATTTATTTTTCATCGTTGTGACTTCTCATTTTCAAATTCGTTTACTTCTACCCAG
Seq C2 exon
GGCAACCAAGGTGCAAAGGGTGAAACAGGTCCTGCTGGCCCTCCTGGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641:ENSGALT00000015706:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):

C1:
PF0139113=Collagen=PD(11.6=44.4),PF0139113=Collagen=FE(25.8=100)
A:
NA
C2:
PF0139113=Collagen=FE(25.8=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGTCCTGAGGGAAACA
R:
CAGGAGGGCCAGCAGGAC
Band lengths:
96-185
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]