GgaINT0097798 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31601722-31604172:-
Coord C1 exon
chr2:31604016-31604172
Coord A exon
chr2:31601853-31604015
Coord C2 exon
chr2:31601722-31601852
Length
2163 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTTTACAAAATGGTTCTAGTTT
3' ss Score
3.39
Exon sequences
Seq C1 exon
GTGCCTTCAGTGTTTTCTGCCCCTATGAGACTACATGCTTCCAATCCTAACTTATCTACAATAGATTTTGTAGAAGAGAAAAACTACTCTGATGGCTCTGAAACATCATCAGAATTTACTAAAATGCAGGAGGACTTAGTTCATATTGCACATAAAG
Seq A exon
GTAAATCAAGTCTGTCTTTCATATTTTGTATCATCACAATTTAATACGATTTCTGAAAACAGGTCCTGTTTAATATTTAGAAGAAGCACAAAACTCCCTCCCTCTCATTCCCTTGTGGAATTGTGAATGTTGATATCTTGAGTCTTTTGAAAAAAATTACTTAATCATCCTATTTTTATTTTTTATGAAGGACCTCCATTTGTTTAATATGTTAAACCAAGATTCTGTTTGTTGCCAAAGGGTAAAAATCCCCACTGCTGTAAATGCAACAACAGATTATATTTTTCTTTGTATCTGTATACATGTGTAGATGAGCACAAGTATGTTAATATACTAAAGTTGGTTCACTGTATTTTAGAGTTTACCATTTGCTGGTGATGCAAAGGTTGCTATGGTAGTAACCTATTTTTAGTGAGTACATAAGAGTAAAATCATGTAAAGCCGTGGGAGGGGCAGCTTGACTGTAAATGTTTCGTTTCTTGAAGTCATTCTTCATTAGCAATACTTTGCCCTGTCACCCTCACACCAGAAACATTTTTGTTGTTTAAGTACATTTATGTCTGAAAGACTTTTTGGAAGTACAGGTGTTGCTCCTTTTTGCACAAGATGAGTTGACATTATCAGTATGCATTCTTTCATTGTTTTTGCCCTCTGGTGCTGATGCATCTTGATTCCATTATGGAAGGAATGTATCTATCTTAGCAGTAAGCTTTATAAAGTAAATTGTAATCGAAGCTCATGCATATTTTCTGAAACTAGAAAAGAAGGTGGGAGCGCAGTTGGAAAAGTTGCTGTCTACAGGAGCACTAGAATTCTCCTGCTCAAGATGTTATTAACTAAACTGTCTGTGATACAAGTTTTGGTTGGATTGAACTATTCCCTAAGGGGACAAAGGCCTACATATTATTTAATACAATATCATTTTATTAAGAATACAAAAGCTACTTTATGCTACCACCTTTCTGGAAAAAAAAGAAAACTTATGCTTTGACATTTGAAACAGCTAAAATGTATCATTACTACTTTATTCTGTAAAAATTCTTGAAAAATTATGTTAGTGTACCAACTATTAAATGAGATGTAAGATCACTGAGGGTTCTGGTCATGTCTCCTACATGTGAAAGGCTAATGTAAAATAGATTGCAACGGACACATCTTCCTCTTCACCCCCTGAAATGTTGTTAGATTTCTTCACATAGATTAAATTATGAAAATTAGCTTTGATAATGGTTTCTGATGATGAAATACACTTAAGGATTATTATTATTTTTTTAAGATTATGTTACTTGAGATACTCCATGAGGTAATATCTCTCAGATTTAATCTGAATAAATAAAAGATGTCTTGTTCTTTACTTTTTTCATACATCCACACTCAGATTTCATCTCCATTTCACTGATAAATTCCTTGATAAACTTTTGCATTGCCTATTCTTGCAATTTTATTATAAGACTTGAGTAGTCCCTCAAAAATCTGTTACTTCTGCAGAATAATGTATTTCAACATTCTACATAAACATTACCTGACTAATTTTTTATTCCTCATAGTTATGTAAAAGATGTCTCAAAAACAGCTTGTGTGATCTATTGTCTCATTTGCCTGTTTTGGGCTAGTGAAATGGACGCAGAAAGAAGTAGGAGTACCATCACATTCAGGATCCGAGCCTTTAAGTCAATAAATCATCTAACAAGCTGAAATATCACCACCATTAACTTGTGGTGAAACTACTAACCCTGTAGCTGTGACACTGTATGTGTTTATAGCTGCCTTCTTGATTTATTTTTTTTCCTTCTCTTCCCTCCCCCACTGGATTCATAAAGGAATGTGGAGTAGAGTCATGACCATCTGAAGATTCACGCTAATTGGGAAACAAAAGCATGTGAAGAGCAGACGTGGTTAGTTAGCTTTGTTGCCATCTGTCACAAATTAATCAAAGCAGTTTTGACTGTGGCTAATATAGTCATCATGTTAGCATTTACCATGAACGTTTCTCCTGGTTAAACAACAACAACAACAAATCTGTTAACCTTGAATAATATACTATCCTGGATCTCTCAAGCTAATTTCTTGTTTCTATCACCATAAATGATGTTTCATTGAAATTTGACTTAACTGATATATTATGTGTAGCTGTTTTTAACATTTTTTACAAAATGGTTCTAG
Seq C2 exon
TTTACTTCACCTTGAAGTCAGCTTTCAGCAGTATATCTACAGAGAGAGAAAAGCTGAAGCAGATGCTGGAGCATGAGGCATCATCATCTCCATCTGCACAAATAGTTGGCTTGAAGAATGCCTTAACATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]