GgaINT0097886 @ galGal3
Intron Retention
Gene
ENSGALG00000008591 | CACNB2
Description
NA
Coordinates
chr2:19118863-19119902:-
Coord C1 exon
chr2:19119834-19119902
Coord A exon
chr2:19118983-19119833
Coord C2 exon
chr2:19118863-19118982
Length
851 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
TTTTCCTTCCCTTTGTGCAGGGC
3' ss Score
10.6
Exon sequences
Seq C1 exon
ATGAAGGCCACCTGGATCAGGCTTCTGAAAAGAGCCAAAGGAGGACGTCTGAAGAATTCTGATATCTGT
Seq A exon
GTAAGCCCTGTCTTTTCATTATTGGCGTATATTCTATGTGTTGCAGAGAGGGAAGGAGGAAAAAAAAAAAAGAAAAAAAAACACGGTGTGGAGAGGACAGTTGTTTTCATTCTAATTGAATTAGCAGAACTCTGTTTTGTATGCAGGGAGATGCAGAGGGAAATCAGAGCTGTCATTATTTATAGAGCTGTTCTGGCATTGGGACTGCTTCCATTGTGGCAGTTTGTGGACCTGCGTTGAGTCCAGACAGATTTTATTAGCAAGAAGTTGATTTGTGGTCATTTACATGTTTTGCTGAGGGGTAGGAGATGGATACGAGCCATTTGCAGTTCTAATGGGGAAAGTGTGTCAGGTAAAGAGGTTGCCCTAAAATAAATGCATAGCAGAAATTAAATCTGCAATCAGGAGTGTTGTGTCACGGTAATTATTGATGGTGAAGTAGCATTTTGATTGTAAAAATGTGTTTCCTTGTTAATAATGTCACTGCTTAGAGTTCTCTTTTTTATGGAGCCATCCTTGAAGCTGCTGTGTGTCCTTCAGCCCTGCACTGCACCACTGCTGTAACTCTACAGAGCGACTGGCACAGTTTACTAAAATGCATACAGATCAGCACACAGGCATAGTGCAGGAAATGCAACACAAGGGAAGACACCTGTACTTTGGAAGTTCTCTGGAAGAAAATGTCTTTTTAGATAAATTTCACTAAGCGTCCTTCCCTTTTTGGCAGTTATTCTCTTTTCAGGGATACAGATGTAAGAGGAAGGACAAGCTCTATAACCACTTCTGCTTTTTTTTTTTTTTTTTGGATTCTAGAACAACTTGTGATACTATTTTTCCTTCCCTTTGTGCAG
Seq C2 exon
GGCTCGGCGGACTCCTACACCAGCCGTCCATCCGACTCCGATGTATCTCTGGAAGAAGACAGGGAAGCAGTGCGGAGAGAGGCAGAGCGACAGGCCCAGGCACAGTTGGAAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591:ENSGALT00000013988:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.863
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGCCACCTGGATCAG
R:
GCTTTTTCCAACTGTGCCTGG
Band lengths:
185-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]