GgaINT0097893 @ galGal3
Intron Retention
Gene
ENSGALG00000008591 | CACNB2
Description
NA
Coordinates
chr2:19066364-19068130:-
Coord C1 exon
chr2:19068072-19068130
Coord A exon
chr2:19066474-19068071
Coord C2 exon
chr2:19066364-19066473
Length
1598 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
ATCTTATTTTATTTTTGCAGTAT
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTAACAGATATGATGCAAAAAGCATTATTTGATTTTTTAAAACATAGATTCGAAGGGCG
Seq A exon
GTAAGTACTTTGCATTGCAAACTTGCTTGAGTTCAGGTCCTACTTAGGTACAAATTAATTTTTAAGAAAAAATGACATACATACACTTTACTTTGAGAACAGGTTTGTTCTTCTATCTCAAAAGACATTTAAATGACCTTAAAGATTTGTTGAAATCTTGAAATGAAAAATTGTTTCCTTCAGTCTTGCATTTGAAAAACAGGAAAATTCTTTCCTATACAACCTGGGAAGGAAATTGGCAGGAGAAAAATTGCCAATTAGTAAATAATAATATCTAACCAATGTCCTAATTTACATGTTGGATTTCATTCTAAGGCTAATGGCCAAAAATCACAATACTTGGCTATGTTTTCAGCTATAGTTATATGATGCCTGAATTTTCAAAATGGTGTTGCTAATCACTCCTGTTTTTCTGTATTAATTTCTGGCTCTGTTAAATTTTTTTCTGGTTATAGAAAGTATATACACATGTTGAACTCATTGGGAAATGACCTTTTTGATTACATTTCAGAAGAGCAGCATCTAAGTATGTTTCTTAGAGAGGAGCTCCCCCTCTCCGAATGCATTTTCTTCTTTTAAATTGCAAGTAAAATCATACAAGGAAGCATAAGGGAGTAACATAAGCCTTTTTTAACTCTCAGCACTGGAAAAATGTGACCTCTAAAACTTCGTTAGACTAGAGCTGGAAGGGGAATTTAGCCAAAGGGTGCTTTTTGACCCTGGAAAGCAAAACAAACTGAGTTAACTGTTTTCCTAGGAAGAAGAATATGCAGAAGGTTGTGTAGCAGGTCAGTGCAAACTGGAAGTAATCACTTATTTCTTGGCTCATCTTTTCTCCTAAACACAGAACTGAGCCTACCAGATACTCAGCCCAGAGTTCTCATTTGCTTTTTTACTACTGTGTTTGCTTCTTTATGTTTCAGTCCTCATTTTCAGATGGCCAACATATTGCTGGAACTTTCTGGAAAAATATAGGTAGCTCTTGCACTCTATTAAAAAACAAACAAACCAACAAACCACCACCACCAACAAAAAACTAGTTAACTCAAGTATTACATGATTTGCCTGTTAAATCTTACCTTCACCTGTTATCACTACATTTTTGCATATAGTAAGCCAGAATGTCATTCAGTACCTTTGGAAAAAAAAAAAAAAATCAATCACAGTTAGGAAAGAAGAAATAAGCCTTTTCGTTTGGGGACAAATTACACCTCCGTTCAGAGAACATAGTGTTTTAGAGTCCTGAAACTGCAGAAATGAAACTGGGCCTACTGGTGCAAGGTCTACCCAAAGCAGGCCTGGAGCCGCCAGGGAGTACGTCTTCCTCACAGCTCTGCCATTTTCCTACCTTTCTCTCCCCAGACTGGTGTAACTTTGCAGATCATGATTGTACTGCAGTTTGGTGCTATGCAGAAAGGGGGATGTCTTCCCAGTAGTTCTTGTAACATTATATCTCTTCTATTCACTTTGTGCAAAGCATACTGAGGCACCAAGGAAGACTTCTTTTTCTGTGTTTTTAGCCAACTTTTAATTTTAAATGAATTTCTTTTCTCCTCAAAATAAATAGCATTCCCATCTATCTTATTTTATTTTTGCAG
Seq C2 exon
TATATCAATTACAAGAGTCACAGCAGACATCTCGCTTGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCATGCGATAATAGAGCGATCCAACACAAGATCAAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591:ENSGALT00000013988:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]