HsaINT0026565 @ hg38
Intron Retention
Gene
ENSG00000165995 | CACNB2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr10:18518910-18527697:+
Coord C1 exon
chr10:18518910-18518968
Coord A exon
chr10:18518969-18527587
Coord C2 exon
chr10:18527588-18527697
Length
8619 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GTGACTTTTTCCTCCAACAGGAT
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTCACAGATATGATGCAAAAAGCGCTGTTTGATTTTTTAAAACACAGATTTGAAGGGCG
Seq A exon
GTGAGTATTTCAGCATACTGGGTTTTGTGGATTTTGTCTTAAAGATGGCAAAACGCTGGTGGGACATGCGTGTGATTCCAAGAGAAAATGGCCCTCTGATGTCTATATGATGACAGGAAACAAGTTTCACTCAATTTAATCTGATTCAATCAATATTTATCATATTTGCTTGGTACATCTTTAACCCCTGATGTCTAGTTCCTGTACCTACATCCATAAGCTGACCTTGGGCAGGACACCACTGGCCAGTCTCACCCTCAATTCATGGTCAACTGGCCCTCTATTGCTGCCCAGGCATCGCACTAAATATCCCTCTTCCATTCACTTTTCCACTCTTCTAAAAGACTTCTGTGCCATCTCCCCCTCCTTAATCCTCTGATAACCCCTTCTCATCTCACGCTCCCCCAGTGAACTTGCTTCCGTGTCATTGAGAAAATAGAGGCAAACAGAGAACATCCAGGCATTTCTACAACCCCGCCTGTGGAGTTGCATGTTTGCCTGCATGCTCTGCTTTATCTCCAATGACTATGTTCCCAGCAAGGGCCAACCCACCATGTGGGCACTAGATCTCATTCCCCATCCCCTCTCTGCTAGAAGTATCCATACAGAGCCGTAATCATCCTTTGCTCTCTCCTCATGAGTATTTCCTGTTCTAATGGAAACTCCATCACCATGTAAAAATGTTAATTCCTATCACATTGACCTCATATTGCTCTAGGTGTCTCATTTTTTTTTCTTTTCTTTACAGGAAGATTCCTTGAAAGAATTGAGTGTACTGGCTTTCCTTCCACTTTCTTCAGCCTACCCCAGTTATGTTTTCACCCACACCACTCAGCTAAACTAGTCATGTCAAGATCACCCATGACCTTCACATTGCTAAATCCAGGGATAAATTTTCAGCCCTAATCTTACTTGACCATGAGCAGTAGTTGACATGGTGGATTATTCCATCCTCTTTGAAATACTTTGCTTGGTTTCTGGAACCACACTTTTCTGGTTTTCCTTCTATCACACTGACTGCTCCTTTGTCTCCTTTGCTGATACTTCCTCATCAACTGGAAATCTTGGACAGCCCAGGGCTAAGCTCTATGATGTCTTTTACCTACATTTCTTTAGTGATTTCATTCAGCATCAGATTTTTAAATTCCATTCCTTTGCCAGTCTTTCCTCTAAATTCTAGACCCATGTATACAATTGCCTATTCATTATCACTACTAAGATGTCTAATGGACTTTTCAAATGTAACCTCCCCCAAAACTTACTCCTCCCATGGTCTTCCCTATCTCAATTAATAGCTTCTTCGTCTTTCAGTCCCGAGACCCTTCAGCCCAGATCATTTTCCTTGACTGTTCTTTCTCTCTTATATTTCACATGCAAATGCTGTTGTCTTTATCTTCAAAATATATTCAGAATCGAAGCCCTTCTCACACATCCTCTGCCACCATTTTGGTCTGAGACATCTTCATCTCTTCCCTGGATTGGTGCAACAGCCTCCCACCTTGTCTCCTTGCTTCTGTGGTTGTTCCCTTAAAGCCTGTGCTCAGGTTAGCTGCTGCATGACCCTGTTAAGATGTGAGCTAGTGCCCACCACTCCTTTACTCAAAACCATCCAGTGACTTCTTTTTTTCCTCTGAATGGAAACCAAAGTCCTACAGTGGCCTACATGACCTCCTATGGTCTATTCTTCCACACGTCCTTACCTAGATTTTCTCTTGCTGCTCTTCCCTCGCTCATTCTCACCCTGCCGTACTTACTCCCTTGCTGTTCTTTGAGTGTTCCAGACAGATTACACAATCACCTCAGGGCTTTGGCACTTTGCAGTTCCTTCTGCTAGGAACACTTTTCCCTCAGATATTCTCCTTGGTATACGTGTGTACATGTATGCACACATACACATGCACACATTTGTTCTGTGTCTCTCCTTTCCCTCTGTTTTCTAGTGCTCTTTTATGTATTTCCAGTACTATTTTTGTTTATTGTCATTCTCCCATAATTAGACGATAAACTCCATGAGGGCAGGGTTTGAGAATGTTTTGTGAACTGTTGTATTCTCAGTGCCTGGAGCAGTACTCAACATGAGCAGTGGCCAGATGAATTTTGAATGAACGTCTGCTGCATACTCTCTGCTAGAGAAATGCGGAGATGGTGAAGCCAGTCTCTGCCTATGAACAGCTCTCATGGAAACCATAAATTGAAACCTGTAGCAGTAACACTGCATATAAGTAAAAGGGCAACTTGGTTATATGCATGCACAAGGTGCAGGTAGCATAAAGGGAGGCGTAATTAACACCAACTTCAGGACATCCACACCTGGAAGAATTTTTAAATGGTGCCTAACGTTTGACCAAATGGATTACAGGGAAGAGAAGGGTATGTTCAGCAGATGGTATATAGTGTGTGAAGGCTTTGAGGTATGACACAGCATTATGTGTAAGGCAACTCACACCCACATCTTAAAGGACATGGGCAAGGAGTGACTGGTAACAAATCCAAGGGTCATATCTAGTGTGTCACGCCAATGGGCTTGGACTTAATCCTTTCTTTCTCCTCCTCTTCCCCCGGTCACTATTCAACTTGCCTCAGTAAGTATTTATTGAGTATATTCTATGTGCCAGGCATTGTGAGGAGCAAAAATAGACAAGGGCCTTGGCTTTGTGGGGCTTAAAGTCTATTGAAAGGCAGTCTTGAATCAAATAATTAATGGGTGCCATCATTGAATGTTAAGCCAGCTCCTGAAGCATCAAAGACATGACTAGAGTCCAAAATGGAAACCTCAGAGTTTAAGAGTAGGTTATTACAGGGGACCTGGAAGATACAGGGCTAGTGTATATTTCTGTATTTTTAACCAGATAAATGCAGTGCTTCTCTTCTCCACATTCCTTTCCTCCTCCCATCCTAACAATGCAACTACAATAGATCAGGAGTCCCAAATCCCCGGGTCACAGATCAGTACTGGTCCATGGCCTGCTAGGGGCCACACAGCAGACGGTGAGTGGCAGGGGAGTGTGCAAAGCTTCATCTGTATTTACAGTCACTCCTCATCACTCACACATTATTGCCTGAGCTCAGCCTCTTGTCAGATCAGCAGCGGCATTAGATTCTCATAGGAGCACAAACTCTACTGTGAACTCTGCATGCGAGGGATCTAGGTTACATGCTCCTTAGGACAGTCTAATGCCTGGTGTTCTTTCACTGTCTCCCATCAACCCCATAAAGGACCATCTAGTTGCAGGAAAACAAGCTCAGGGATCCCACTGATTCTACATTATGGTGAGTTGTATAATCACTTCATTATATATTCCAGTGTAATAATAATAGAAAGAAAGTACACAATAAATGTAATGTGCCTGAATCATCTCAAAACCATCTCCCCACTCCTACCAAACCGGTCCACGGAAAAGTTGTCTTTAATGAAACTGGTCCCTGGTGCCAAAAAGGTTGGGGACTGCTGCAATAGATAGTATTTGTTGGTTTCAGGATTCTTTTAGATTTCTTACTATAGTACTTTCTTTCTAGACCACACCTACTACTACAACCATTTCTAATTTATATTGACTTTTGGCAGGGGAGGCAAGGGTAGGAAGGAAAGTTTTATAGGAGGACAAGTCTTTTTAGTAAGTGATCAAGCAGGCTGGGCTTGGTGGCTCCTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATAATGAGGTCAAGTGTTCGAGACCGGCTTCGCCAACATGGTGAAACCTCGTCTCTACTAAAGATAAGAAAATTAGCTGGGCATGTTGGCGGGTGCCTGCAGTCCCAGCTACTCGAAAAGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGACGTTGCAGTGAGCCGAGATCGTGCCACTGCCCTCCAGCCTGGGAAACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGATCAGGCAAAGAACTGAAAGGAGAGAGAATGAGGAAAACAAAAACTATTATAAGTTTCAAGGTATGAAAAGACTTTATAATCAAGGTCTTCTAACCAAATATTCCTAATTAGATTTTTTTAATTTTCCATATCTTTAAGAAATATTTTTCAGTTTGTGACAGGAAATAGACCCTTTAGCTTGGACCAAGGCTACTAGGCACTGGCCAAGTATAAAAGGCATAGCTCTACTCTGCTCCATTTAGCTTGTTTCTTTATCCTTGGCTCTGTCATTTATCACAATTTGGAATTGTCAACATGAGCCTGAACACTAAAAAAAATTCTGCTAACAAAGGCACTGTGTTTTCCATGCCTGAGTCAACCCACTGCCCTTTCCTAAATGCCAAAGATGGGGAAATGGGATGGAATTTCCTGGATTACTACTTGTACTTAAACCTGAGTAAGTTTTGAATTTGGAAGACACATTCCAGCCAGAGAGGGTGGATTTTGGACCCATGTTCGAGTGTATCAGCCACCCAGATTGGTTTTATTTAAGAAACAGATAAACAAAATATCTTAAAGTATCTGTTATTTCTAGCCAGAAGTAACTTTCATATGGTTTAATTAATAGACCTGCCTTGGCTCATCTTGACTTACAGAGCTGGGGTTCTATATTCTAGCCCTGTTCTCCCCAGTTAACAGTCCTCAGAGGAAGAAACGAGTCCATAAGGCAGAATTTAAAAGCTGTGTACAAATTTAACATTTTTACCCATGGCAAGACATCTAGAGTAACTGAATTATTGACTGTCTTTGCTTTTGGCAAGGCAAGACAGCAATAGAGGATGGAAATTCAACAAAAGTATCAGGTGTGTATATACATATGACATTCTAAAAGGGAAAAATGAATTATTCCTTAATCATCTATTAAATAAGCTAAGTTTATTTTTTAAAAACGTTTAAGCCCAAGAGGAGAAAATATGAAAGGAAATGTTAGTTATGCGAAAGGTTCTAGGTAGTCAAGAATTCCTTTTTCTTTTCTGAAACCCACTTAAATTCATTTGCAGCAGCCCTAGGGGGTTGTCAGAATCACATTCTGGTTAAGTAGTGTCAGTGTGTCAGATCAAAGAAGAAATAAATCATCCTCCTCCTCCTCCTGTTGTGTGCAATAAAGTAGCCCATTCAAAACTGGATTCACAGTAACCAACTGTGTCATGTAAACAAAGCAATCTTCAGATTCACCTTGTAGGATGGTGACAGGTAAATTAACAAGGAAGTTGAGAACAAGAAGGAAAGCTACCTGGGATAAATTCACGGTTTTTTTTTTTTGTTTTTTTGTTTTGTTTTGTTTCCTTCAGTGACTTTCAAAACGTCAGCAATCAGCCCTGAAGTGTTTGGAATGCATACTGAATTGCTACAGGGATAAATATACCATTGCCAGAATCTTCTGTAGGACAGTCTTACTAGAAATCAGTAATCCTGAGGCTGAGCACAGTGGCTGTCACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGATACCTGTTTCTACTAAAAGTACAAAAATTAGCTGGGCACAATGGTGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAAGCGCCTGAACCCAGGAGGCGGAGATTGCAGTAAGCCAAGATCACACCATTGCATTCTAGCCTGGGTGACAGAGCAAGACTCTATCTTAAAAAAAAAAAAAAAAAAAAATTGAGCAAATAAAAAGTTGTTTATCTCATGGAAACCACGAGGAAAATACACAAGAAAAAGTATAGTAGGCTGGGTGCAGCAGTTCACACCTGTAATCCCAGCACTTTAGGAGGCTAAGGGAGGAGGACTGCTTGAGCTCAGAAGTTTCAGACCAGCCTGGGCAACATAATGAGGCCCTGTTTCTACTAAAAAAAAAAAAAAAAAATTAGCTAGGTGTGGTGGCATGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGCCAGGGGGATCACTTGAGCCTGGGAGGTTGAGGCTGCAGTGAGCTATGATTACTACACCCTTGCACTCCAGCCTGGGTGACAGTGAGATGCTGTCTAAAAAAAAAAAAAAAAAAAACACATTATATGACATAGTTCATTGACTATTATTTACATAGTTTCAATAAATATTAAATATGGAGCCAGCCAAAATTAATTTGTCTATTTGAATCCCTCTGGGACATTCTAGCCTGTTGCAGTGTAGATCTTTCTTTCTGTGCTGGGTGTCATTCTGGAACATTCCGTGTTATATGCTTGGGGATTCCTTTCACCTTTGTTTTGGGTTGAAGCTCCTGTTTCCCAGATCCCTTGATTTCTTTCAAGCTTTACTGTCATTTTAGTCAAAAACCTTCTCATTTCCCTAGGAAGGGTATATACATGTTTTTTTCAATAGCCTGAATGTTTACAAACCTTTCTGTTTAATTGCTAGTTTAAATGCTTATGGAATTCTGATTGAAATAGTTTTCCCTCCAAATTTTGAAGGCTTTTTGCTTCATTACCTTGTGGCTTCCATTGTTGCTTTGAGAAGTACAAAGCATTCTAGTGCTTTGATTCTAGACCCTTTGGGACCTGTCTTTTTCCTCTGAAAGCTTATGGGTTTCTCTTTGTCCCCAGTGTTATGAAATTCATAAAAATATGTCTTGGTGTGGGTATTTCAACCCGTGTGCCGGACCCTTTCAATTCAGAAAATCAGATCCTTAATTCTGGAATTAATTCTTTATTTTCTTTCCTCTGTCTTCTTTATTATCTTTTTCTGAACTCCTGTAATTTGGAATTTGAACCTCTTGGGTTATGTCTACTTTTCTTACTTTTCTTCTCCTATCTTCCAACTCTTTTTTGTTTTACCCTTTGGAAATGTTACATTTCTTTTAACCTTTCTTTTGCTTTTTTTCTATTTCTATTATCATGTTACTTCCAAAAGCTCTTATTCTAAGTCTTTAAATAGAAATTTGTTCTAGTCTCATAGATAAAACCATCTTTTAGCTTTTAACTGTGAATAATTGTCATAATTGATTTTTCTGTTTGTTTTGCTCTCTCATGAGGTTTTCTGAAGATGCCTGACAAACTGTCCTGTGCTCAAATTTTAAAATAAGGCATAAAATAATTAATCAGAGGTTCTGTGCTCATAGGCGGAGCTTGTCAACTTTGTGTTTCTGTGTATGGCAATCTTGCTAGATAATTTACACAGGAAACCTCCAATATCATTATCTTTGGGTCCTTACAATTTGGCAGTCAGATTCCCCAGAGAAGAATCTTCCATTCTGACCCCTGGGGATATAAATATAAGCCTGGCTACCAAAACTGTACAATGAGAAGAAAGGCTGAAGACTCAACATTCAGAATCCTTTCTTTTCCATCCAGTATTCCCTGCTCCTGTTCTGTCTAGGGTCCCCTGGTCAGAGGCCCTCTTGTATTGCCTGCAAGATAACAAATGTAGGGTCTTGTACCACACAGGAAAAGAACTGTCACCTGGCTATTTGATATTGTGAGGGGGCAGTGGAGGGCTGTAACTGAAACAGACTTTTGAACCAAACTTTTCCTTTTCGCCCTAACTTCATTCTCTACCTTCTTTAGAAATATTGTGAGCCTTCAATTTTGCTTCACAGCTTTTTCCTACTGCTGACTTGAATATTCAGCTTTCTGCAGTCTAAGTCATTTGCTATTTCCAGTTCCCAAATTTTGTTGCTCTCATTTCTACCTTATCTAAAATGATACTCCCAATTCAATATTGTCTCTCATAATACCCTGTATGTTCTTTCCACAACAATCATCATCTTTAATTATTTTCCTTTATTATTTATCTCTGCCACTAGACCATTAGCTATCTGAGGGAAGACTGGTTCTTATTTATTTTTCATGCCTATCACAGCAATGAACTATGGCACAGAGACTAGGAATATAGGGTCAGGAGTCTGGGTTCAAATCCCAGCTCTCCCACTTAGTTACATACATACCCTTGGATAAAAAATCTCTCTGTGAGTCTCATTTTTCATCAGCAACAGTGGGATAATAGTAAACGTTTCTCCTAGAGCTTTTTGGATCATTTAGTAATTCAAATAAAGTGCTCAGTACTTATCTGACACTTGTAAGCAACAAGTAAGTGCAACGTAAGGCAGGTGCAGGATAGGGCCGGGCGCGGTGGCTCACACCTATAATCCCAGCACTTTGGAAGGCCGAGGGAGGCGGATCACTTGAGGCCAGGAATTCAAGACCAGCTTCCATAGTGAAACCCCCTCTGTACTGAAAATACAAAAATTAGCCGGGTGTGGTGGCACACACCTGTAGTCCCAGCTACTCCAGAGGCTGAGGCAGGAGAATCACTTGAACCTGAAAGGTGGAGATTGCAGTGAGCCGAGAACGCACCACTGCATTGCAGCCTGGGCAGCCTGGGCGAGACTCTGTCTCAAAACAAACAAAAAACAAAGTAAGGCAGGTGCAAGATAAAAATGAATAAGTAAAAAGAAAAAAAATGAATAAGTAAGTATCCTAACACATATGGTTTGAAAATATGGTTGCTATATATATTTCATACTTAGATGAATTTGGGGCATACACTTCTATCCCCTTTGATTAGACCAATAACCTTAAGGTCTTCTGTGACTTTTTCCTCCAACAG
Seq C2 exon
GATATCCATCACAAGGGTCACCGCTGACATCTCGCTTGCCAAACGCTCGGTATTAAACAATCCCAGTAAGCACGCAATAATAGAAAGATCCAACACAAGGTCAAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165995:ENST00000324631:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development