HsaEX0054940 @ hg38
Exon Skipping
Gene
ENSG00000240291 | RP11-499P20.2
Description
NA
Coordinates
chr10:18513115-18541248:-
Coord C1 exon
chr10:18541169-18541248
Coord A exon
chr10:18539194-18539299
Coord C2 exon
chr10:18513115-18513660
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTGACTGGTTCCACACTAGGTT
3' ss Score
5.83
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AACAGAAACTTTGGTTATAAGAAGCACTTCTGGGTTCTGACAGACAGTGAACCTGCTGGAGTCGGTGGTGGGGAGGAATG
Seq A exon
GTTCTTCTTCAGCTTGGGAAGCAGAACGGATAGGAGCGGAGCGATCAGTCCTCTGATCACCTTGAGAACCCTGGCAGCGAAAGGAGCACACCAGGCGTTAACCAAG
Seq C2 exon
ACTATGGAAATGATGTCAGACAAAAAGCGAATTTGAGTGACTTTCTTATTCGAGTTCAAAATGGGTCGTAAAGCAGTGGAGACAACTTGCAATATCAACAATGCATTTGGCCCAGGAACTGCTAATGAACGTACAGTGCGGTGGTGGTTCACGAAGCTTTGCAAAGGAGACGAGGGACTTGAAGATGAGGAGCATAGTGGCTGACCATTGGAAGTTGACAGCGACTACTCAAGAACAATAATCAAAGCTGATTCTCTTACAACTACACGAGAAGTTGCTGAAGAATTCAACATTGACCATTCTATGGTCTTTCTACATTTGAAGCAAATCGGAAAGGTGAAAAAACTCAATAAGTAGGTGCCTCATGAGCCAAGCAAAAATAAATTGTTGTTTGGAAGCATCTTCTCTTATTCTGTGCAACAACAATGAACCATTTCTCAGTCGGATTGTGACGTGGGACGAAAATTGGATTTTATATGACAACCACTGACAACCAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240291-'4-19,'4-13,5-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGTGAACCTGCTGGAGT
R:
GGTCAGCCACTATGCTCCTCA
Band lengths:
245-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development