HsaINT0026558 @ hg38
Intron Retention
Gene
ENSG00000165995 | CACNB2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr10:18538180-18541127:+
Coord C1 exon
chr10:18538180-18538365
Coord A exon
chr10:18538366-18539229
Coord C2 exon
chr10:18539230-18541127
Length
864 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTGCTCCTTTCGCTGCCAGGGT
3' ss Score
8.97
Exon sequences
Seq C1 exon
GAGCTGTTCGATGTGATCTTGGATGAGAACCAGCTTGAGGATGCCTGTGAGCACCTTGCCGACTATCTGGAGGCCTACTGGAAGGCCACCCATCCTCCCAGCAGTAGCCTCCCCAACCCTCTCCTTAGCCGTACATTAGCCACTTCAAGTCTGCCTCTTAGCCCCACCCTAGCCTCTAATTCACAG
Seq A exon
GTAAGGGGAGTTTTTATATATATCTATATATACAATCTTCATAGAAAAAAGGTTGCCTATGGTGACACCTCTAGGATCCAAGCCCAGTAGCCTGCTTGGGGCTTGTTCTAGTATATTAACTCAAAGCAAGTCCAGCATGAGCTGTGTATGTACCTGTAAGAAAAGCACCATCAACAGAATATATTGGGAACATACACAGACTACCGAAACTTTCTAAACAGTAGCATAGACTGTGGAAGTGGATCACCTAGATTCAAATCCTGGCTGCACCTCTTACCACTTGTGGGGTGGATAACCTGGGGCAAATTTCTTAACTGTTCTTACCTCAGGAATAATAATGGCAACCTGTCCAAGAGGCTGCTGGAATTAATAATCTCAAGAGATGATCTTATAGGGCTGTTGTATTAATGAGTTATTATATACAAAGGGTCTACAGAACAGTGCCTGTCCCATACTGTATCACTGTATCAGGTAAGCATTTGCTATTTTTAATATTCTCACATACAGTCAAGCAGAGGTAGTTAAGTTTACACCGCTGTATAGAAAAATCTCAGGGACCTGCATCTGTATTTGAGCCACAGGAGAATAAATAAAAGAACATTTTCCCTGCTGCTGCTTTTTTTTTTTTAAAGGAAAAAGTTACCATGGGCACTGTTCTAGGCACTTACAAAAGTCCAATTTAATATAGTATAGTATAAAGCCTTATAAATGCCACTGGATGTTACCAAAGGGATGAAGCTAGGTTAGACTTCATTTCAGCTTTTCGGATGCTTAAAAAGGACTCTGCTTGAATGCACTTGCTCTGGGACATGTTCTTTACACACTGACCTTGGTTAACGCCTGGTGTGCTCCTTTCGCTGCCAG
Seq C2 exon
GGTTCTCAAGGTGATCAGAGGACTGATCGCTCCGCTCCTATCCGTTCTGCTTCCCAAGCTGAAGAAGAACCTAGTGTGGAACCAGTCAAGAAATCCCAGCACCGCTCTTCCTCCTCAGCCCCACACCACAACCATCGCAGTGGGACAAGTCGCGGCCTCTCCAGGCAAGAGACATTTGACTCGGAAACCCAGGAGAGTCGAGACTCTGCCTACGTAGAGCCAAAGGAAGATTATTCCCATGACCACGTGGACCACTATGCCTCACACCGTGACCACAACCACAGAGACGAGACCCACGGGAGCAGTGACCACAGACACAGGGAGTCCCGGCACCGTTCCCGGGACGTGGATCGAGAGCAGGACCACAACGAGTGCAACAAGCAGCGCAGCCGTCATAAATCCAAGGATCGCTACTGTGAAAAGGATGGAGAAGTGATATCAAAAAAACGGAATGAGGCTGGGGAGTGGAACAGGGATGTTTACATCCGCCAATGAGTTTTGCCCGTTTGTGTTTTTTTTTTTTTTTTTTTGAAGTCTTGTATAACTAACAGCATCCCCAAAACAAAGTCTTTGGGGTCTACACTGCAATCATATGTGATCTGTCTTGTAATATTTTGTATTATTGCTGTTGCTTGAATAGCAATAGCATGGATAGAGTATTGAGATACTTTTTCTTTTGTAAGTGCTACATAAATTGGCCTGGTATGGCTGCAGTCCTCCGGTTGCATACTGGACTCTTCAAAAACTGTTTTGGGTAGCTGCCACTTGAACAAAATCTGTTGCCACCCAGGTGATGTTAGTGTTTTAAGAAATGTAGTTGATGTATCCAACAAGCCAGAATCAGCACAGATAAAAAGTGGAATTTCTTGTTTCTCCAGATTTTTAATACGTTAATACGCAGGCATCTGATTTGCATATTCATTCATGGACCACTGTTTCTTGCTTGTACCTCTGGCTGACTAAATTTGGGGACAGATTCAGTCTTGCCTTACACAAAGGGGATCATAAAGTTAGAATCTATTTTCTATGTACTAGTACTGTGTACTGTATAGACAGTTTGTAAATGTTATTTCTGCAAACAAACACCTTCTTATTATATATATAATATATATATATATCAGTTTGATCACACTATTTTAGAGTCTTAATGCCAAGTCAGCAGATTTGCTTTATGAATTACAGGGACTAGAAATGCCCACATTCAGGAAATTTGTAATAACATTGTCTAGACACCTATCCTCATTCTAGTAGAAAGTGTGTACATACTGTAAATATGTGTGATTGCTTGACTTGAAAAGGTTTGAATTCTGAATGTTATACCATCCTTGTAAGTAAGTTTGTAATTTCCACCATAAATTATGGTAAATATAAAACTCCAGAGGTTGTTCTACTCCATACAGTTCACACTGATTGTGACACATTCTTAGTAGCTAGTGTCTGTTCTAGTCACTGCACTGGAGTCTACGAGCCGGAACTCGCTATATGCACGTGTGTGTGTCCGTATGTAAGAAAGTGTGCACCGAGTGACTGAATGGTTGAGATGAATTGGAATGCTGAAGACTAACGAAGAAACTAGAGACTGATATCGAGCATTCTGCCCACCTCGCTCTGTATTTAATTAATTGTGCTATATGTTGCTTTAACAACCCATTGAGCAGTCAGGGAATGTGAGTAAGCTTGCTGCCAAAGGTAACTAGGAAAGCATTCATCTGCTGCCTCCTTGTTTTTGCTCCTAGAGAGTGAAAATACAGGCAATTTTACTGTGAGTGTTTCACTGGAAATGTACAATCTTTGTGTGTTAGAGTATTTGTTTTAGTAAGAAATGTTTACACAGCTTGTGGAATTATTTCGTGGGAAAATAAATTTTTATAACTTCTCCCACTTCAATTTCTAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165995:ENST00000324631:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=NA C2=0.994
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCAACCCTCTCCTTAG
R:
GTCACGGTGTGAGGCATAGTG
Band lengths:
352-1216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development