HsaINT1035593 @ hg38
Intron Retention
Gene
ENSG00000240291 | RP11-499P20.2
Description
NA
Coordinates
chr10:18539194-18541248:-
Coord C1 exon
chr10:18541169-18541248
Coord A exon
chr10:18539300-18541168
Coord C2 exon
chr10:18539194-18539299
Length
1869 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CTTGACTGGTTCCACACTAGGTT
3' ss Score
5.83
Exon sequences
Seq C1 exon
AACAGAAACTTTGGTTATAAGAAGCACTTCTGGGTTCTGACAGACAGTGAACCTGCTGGAGTCGGTGGTGGGGAGGAATG
Seq A exon
GTAGGTAACTGGGAGGTAAACAAACAACAGGAACAATAGGCAAGGTTAGAAATTGAAGTGGGAGAAGTTATAAAAATTTATTTTCCCACGAAATAATTCCACAAGCTGTGTAAACATTTCTTACTAAAACAAATACTCTAACACACAAAGATTGTACATTTCCAGTGAAACACTCACAGTAAAATTGCCTGTATTTTCACTCTCTAGGAGCAAAAACAAGGAGGCAGCAGATGAATGCTTTCCTAGTTACCTTTGGCAGCAAGCTTACTCACATTCCCTGACTGCTCAATGGGTTGTTAAAGCAACATATAGCACAATTAATTAAATACAGAGCGAGGTGGGCAGAATGCTCGATATCAGTCTCTAGTTTCTTCGTTAGTCTTCAGCATTCCAATTCATCTCAACCATTCAGTCACTCGGTGCACACTTTCTTACATACGGACACACACACGTGCATATAGCGAGTTCCGGCTCGTAGACTCCAGTGCAGTGACTAGAACAGACACTAGCTACTAAGAATGTGTCACAATCAGTGTGAACTGTATGGAGTAGAACAACCTCTGGAGTTTTATATTTACCATAATTTATGGTGGAAATTACAAACTTACTTACAAGGATGGTATAACATTCAGAATTCAAACCTTTTCAAGTCAAGCAATCACACATATTTACAGTATGTACACACTTTCTACTAGAATGAGGATAGGTGTCTAGACAATGTTATTACAAATTTCCTGAATGTGGGCATTTCTAGTCCCTGTAATTCATAAAGCAAATCTGCTGACTTGGCATTAAGACTCTAAAATAGTGTGATCAAACTGATATATATATATATTATATATATAATAAGAAGGTGTTTGTTTGCAGAAATAACATTTACAAACTGTCTATACAGTACACAGTACTAGTACATAGAAAATAGATTCTAACTTTATGATCCCCTTTGTGTAAGGCAAGACTGAATCTGTCCCCAAATTTAGTCAGCCAGAGGTACAAGCAAGAAACAGTGGTCCATGAATGAATATGCAAATCAGATGCCTGCGTATTAACGTATTAAAAATCTGGAGAAACAAGAAATTCCACTTTTTATCTGTGCTGATTCTGGCTTGTTGGATACATCAACTACATTTCTTAAAACACTAACATCACCTGGGTGGCAACAGATTTTGTTCAAGTGGCAGCTACCCAAAACAGTTTTTGAAGAGTCCAGTATGCAACCGGAGGACTGCAGCCATACCAGGCCAATTTATGTAGCACTTACAAAAGAAAAAGTATCTCAATACTCTATCCATGCTATTGCTATTCAAGCAACAGCAATAATACAAAATATTACAAGACAGATCACATATGATTGCAGTGTAGACCCCAAAGACTTTGTTTTGGGGATGCTGTTAGTTATACAAGACTTCAAAAAAAAAAAAAAAAAAACACAAACGGGCAAAACTCATTGGCGGATGTAAACATCCCTGTTCCACTCCCCAGCCTCATTCCGTTTTTTTGATATCACTTCTCCATCCTTTTCACAGTAGCGATCCTTGGATTTATGACGGCTGCGCTGCTTGTTGCACTCGTTGTGGTCCTGCTCTCGATCCACGTCCCGGGAACGGTGCCGGGACTCCCTGTGTCTGTGGTCACTGCTCCCGTGGGTCTCGTCTCTGTGGTTGTGGTCACGGTGTGAGGCATAGTGGTCCACGTGGTCATGGGAATAATCTTCCTTTGGCTCTACGTAGGCAGAGTCTCGACTCTCCTGGGTTTCCGAGTCAAATGTCTCTTGCCTGGAGAGGCCGCGACTTGTCCCACTGCGATGGTTGTGGTGTGGGGCTGAGGAGGAAGAGCGGTGCTGGGATTTCTTGACTGGTTCCACACTAG
Seq C2 exon
GTTCTTCTTCAGCTTGGGAAGCAGAACGGATAGGAGCGGAGCGATCAGTCCTCTGATCACCTTGAGAACCCTGGCAGCGAAAGGAGCACACCAGGCGTTAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240291:ENST00000425669:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAACTTTGGTTATAAGAAGCAC
R:
CTTGGTTAACGCCTGGTGTGC
Band lengths:
185-2054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains