HsaINT1034021 @ hg38
Intron Retention
Gene
ENSG00000225527 | RP11-383B4.4
Description
NA
Coordinates
chr10:18531849-18533336:-
Coord C1 exon
chr10:18533037-18533336
Coord A exon
chr10:18531962-18533036
Coord C2 exon
chr10:18531849-18531961
Length
1075 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
GTCAATTTGATTCTTTCCAGTTG
3' ss Score
7.15
Exon sequences
Seq C1 exon
AAATATTCTCTGTATGTGGTCCAGCGTGGCAGCAGCTAATGGGCTACTGAGCACTTGAACAGGCGTGTAAATTTTTAAAATTTAATAAATAGGCAGAAGCTACTATTACTAGGCAGCATAGGTCTATAAAGCATAGTACATAGCTTTCACTTCCCACTGCAGTCGTGGAGGTTGAATTCCATGAGACTTTTATGCTAGCAAATGTGGATTTACAATTACCTTTTAATTCCTCTTAGGCCGTTGGATTCTTGCCAGAAGCTTCCTGGAGATAATTTTAACTAGTACCTTATTGAAGAAAAG
Seq A exon
GTAACTCTCTGGTCACTAATCCATCTGCCTCACAATATGTTATGACTTGAGTCCTTTTTTTTTTACCTAGATATCTTTAAAAAATCAGGGCCCAAACTACATGAGATACTAGCTTTAAAATAACATTGGGCCACTGAATCCCAGTCAAGTTACAACCTAAATTAATATTTACTGTAAGCATTAAGAAATCTGATCACAAAGATTTTCATCTTTGTTTCATCTGTTAAGTGTTCAGACAGTCACAGCATCCCGTGTAACTCCTTGCTTTTAAAGGTTTGAGTAGTACAAGTTTAATATGTGGGTTTTTTTGTTTTTTTTGTTTGTTTGTTTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCTCTCTGTCTCCCAGGCTGGAGTGCAGTGGTGCAGTCTCGGCTCACCACAATCTCCTCCACCTCCTCAGTTCAAGTGATTCTCTCGCCTCAGCCTCCCACATAGCTGGAATTACCGGCATGTGCCACCAGGCCCAGCTAATGTTTTGTACTTTTAGTAGAGATGGCGTTTCACCATGTTGGCAAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTCCCGCCTTAGCCTCCCAAAGTGCTGGCATTACAGGCGTGAGCCACTGCGCCCAGCCCTAATATGTGCTGATTGTATAAAACCTGGATAGCCTTAAAATATATTACATATATGGATATTATTTATATTATGTCAATATATTAACATGTTTTAATATATACACATATATAAAGATATTTGTGGTAGCCTTACATACATACTTTACACTCCGTTAATTAAAGGGAAAGAGTTTTAAAATATTTTAAAGTGGACTTTCAGAATCCTGGTGCAACACTGTATTAGTAGATACAACCTTAAGAATCGATGACAAATTCTGATAATACTTTTGACTTCAAAGTAAAAATGATGCTTTTAAAAATGGATGTATCCATGCTAGGAATTTTCCTTTGACAGAGTATATCATGCTCAGAATTTACTCTAATAAAGAAATGTCAGAAACTTCCCCAATGTTCGTTTCTGAAACTGAAAGTCAATTTGATTCTTTCCAG
Seq C2 exon
TTGTCCTAGCTAATGAAAGAATGCAGCTCAGCATCTTGAAGACGGGGCAAGCCTTCCTCATCTCCCCACATCCCACAGTTTCTTATACCCACTGAATTAAACTGAAAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225527:ENST00000433526:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTATGTGGTCCAGCGT
R:
CTTGCCCCGTCTTCAAGATGC
Band lengths:
345-1420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains