GgaINT0097912 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:32547954-32548606:-
Coord C1 exon
chr2:32548277-32548606
Coord A exon
chr2:32548071-32548276
Coord C2 exon
chr2:32547954-32548070
Length
206 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTCCCCTTTTCTGTCCAAAGCGT
3' ss Score
9.4
Exon sequences
Seq C1 exon
CACCTCGGGTCACCTTGCAGATTTACGGCCGCGCACAGCACCGCATCCTTCTCCGTCCAACCCGGCGCCAGAGCCTCACGGTAGAGAGGTGCAGCGAAAAGAGCGTTCTCCGAGATCTAATCGCGGTCAATAATAGGAAGCAGAACCCTCTCGGCTCGCCGGCGCAGAGCTGAGCCTACAAATCGGGACAGCGGTTTTCGTTGTGTTTGCTCGTGCCTCGGGAGCACGGAGCCTGCTGTTCCGAGCCAGCCATAGAGCCTCCGGACTTGCCTTATGCCGAGGATAACGTGCCCGGTACCGCAGGGCAACGCATCTGGTGGCGGCCAGCAG
Seq A exon
GTATTTGTGCGTGCGTGAGGCTCTGCGCCGGGAACGTGCTTTGGGCTTTGGCAATCTTTCCTTTCTTTCTTTCTTTCTCGCTTTTTTTTTTTTTTTAATATTATTTTTTTAAGGTAATGCAGGTGGAAGCTCTAATTTTCCAATCTGGGTTGCCGTGTTGTTGTTATTGTTTTTTAATAAAGCAATCTCCCCTTTTCTGTCCAAAG
Seq C2 exon
CGTGCTGCTGAGTCTGTGTGCGTGTGTGTAACCGCATTTCCTCTCCACGCAGAGTAAATAGAGGAACTTATCTATTACCCCAGTTAAAGAGTTCCATAGATGTTCTGTTGGAAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021834:ENSGALT00000035377:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCCTCACGGTAGAGAG
R:
GAAATGCGGTTACACACACGC
Band lengths:
303-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]