GgaEX0016579 @ galGal3
Exon Skipping
Gene
ENSGALG00000011054 | HOXA3
Description
NA
Coordinates
chr2:32526899-32556568:-
Coord C1 exon
chr2:32556468-32556568
Coord A exon
chr2:32542367-32542558
Coord C2 exon
chr2:32526899-32527487
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTGTAATTCAACAGCGG
3' ss Score
6.94
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CGTGTGCCTCCTGGCCATTCACATTGTCACTTTTAGGTACAGAAGTATCCAAACCACAAGTTCTCAATACTGTGTGAAAAAATGGCTCCCTGCAAGTCGAG
Seq A exon
CGGTTCTGAAAGGCATTCTCTTGGAAAAGTCTGTGAAGACGCAAAGGATTTTCCTGGAAAAAAAAGTAATAATAAAGTGGTCATGTGTAAAGACACCGCAGCTCGGCTGCCTGCTAAAAACATGCACACTCTCTCGGTGGAGATAGAGCGGCGGACTGCAAAATGCCCCACGGCCGATTTTCGTCGTTTAAG
Seq C2 exon
GTCTGCCCGGAGCGGCCATTGGAGGAGCAGCGCCACGTGACAGAGGGGTGCCAATGTTATTCTCCAAGGGTGTCAAGACCCTGTCAGTTTGCGAAATAAATATTGGGAAACAACGAAATGCAAAAAGCGACCTACTACGACAGCTCTGCAATCTATGGTGCCTACCCCTACCAAGGAGCAAATGGTTTCACTTATAATGCGAGTCAGCAGCAATATCCTCCATCTTCGTCACTTGTGGAAACTGAGTACCACCGCCCCGCGTGCTCCCTCCAGTCCCCTGGCAGCGCCGTGTCCCACCACAAGGCCAATGACATCAGTGAGAGTTGCATGAGGACTCTCCCCAGCCAGCCTCTGCAGCCCCCTGGCCTCACCGACCCGCAGGCCCCGCCGCAGCCACCTCCAGCCCCGCAGGCACAGCCTCCACCTCCATCCTCGGCCTCACCATCTCAAAATGCCAGCAGCAACCCTGCCCCGGCCAACTCCACTAAGAGCCCGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011054-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.854
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGGCCATTCACATTGT
R:
AGAGCTGTCGTAGTAGGTCGC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event