GgaEX0016579 @ galGal4
Exon Skipping
Description
Homeobox protein Hox-A5 [Source:UniProtKB/Swiss-Prot;Acc:Q6B3N0]
Coordinates
chr2:32806929-32847388:-
Coord C1 exon
chr2:32847311-32847388
Coord A exon
chr2:32822102-32822293
Coord C2 exon
chr2:32806929-32807181
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTGTAATTCAACAGCGG
3' ss Score
6.94
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGGGCGATTCGTCTCCTGTGCAGCCAAAGCGACAGCTGTCAAAGTCGCAGGGGCTCCTGCGAGCCAGAACCTAAAAG
Seq A exon
CGGTTCTGAAAGGCATTCTCTTGGAAAAGTCTGTGAAGACGCAAAGGATTTTCCTGGAAAAAAAAGTAATAATAAAGTGGTCATGTGTAAAGACACCGCAGCTCGGCTGCCTGCTAAAAACATGCACACTCTCTCGGTGGAGATAGAGCGGCGGACTGCAAAATGCCCCACGGCCGATTTTCGTCGTTTAAG
Seq C2 exon
GTCTGCCCGGAGCGGCCATTGGAGGAGCAGCGCCACGTGACAGAGGGGTGCCAATGTTATTCTCCAAGGGTGTCAAGACCCTGTCAGTTTGCGAAATAAATATTGGGAAACAACGAAATGCAAAAAGCGACCTACTACGACAGCTCTGCAATCTATGGTGCCTACCCCTACCAAGGAGCAAATGGTTTCACTTATAATGCGAGTCAGCAGCAATATCCTCCATCTTCGTCACTTGTGGAAACTGAGTACCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025929_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCGAGCCAGAACCTAAA
R:
AGGATATTGCTGCTGACTCGC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]