BtaEX0017351 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008139 | HOXA3
Description
Bos taurus homeobox A3 (HOXA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076825]
Coordinates
chr4:69357161-69374755:+
Coord C1 exon
chr4:69357161-69357229
Coord A exon
chr4:69370270-69370449
Coord C2 exon
chr4:69374673-69374755
Length
180 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTGTAATTCAACAGCAA
3' ss Score
6.47
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTAGGTCCAGAAGTGTCCACACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTACCTCCGAGTTAAG
Seq A exon
CAATTCTGAAAGGCATTCTCTGGGAAAAGTCTGTGGAGAAGCAAGGGATCTTCTTGCAAATAATGTGGTCTCGGGCAAAGACTCAGCATCTTGGCTGTCTGCTCAAAAAATGCCTAGCCTCTTGGTGGAAATTGAGTGTCGAGCTGCAAAACCTCAATTGGCAGATTATCATCATTTAAG
Seq C2 exon
AGCCGCCGGATGCCGGAAACGGGGAGTCCCTGAGCGCCCGGAGCTAGAGACACTCTCGGCTTCAGCCTTGGACATCTTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008139_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTCCAGAAGTGTCCACAC
R:
TCGAAAGATGTCCAAGGCTGA
Band lengths:
149-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development