GgaINT0098071 @ galGal3
Intron Retention
Gene
ENSGALG00000007559 | E1BZW8_CHICK
Description
NA
Coordinates
chr2:16026412-16027183:-
Coord C1 exon
chr2:16027136-16027183
Coord A exon
chr2:16026477-16027135
Coord C2 exon
chr2:16026412-16026476
Length
659 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCTGCTTTTTCTTCGTGCAGATG
3' ss Score
10.56
Exon sequences
Seq C1 exon
CCGCCGGCGCACGGCCTACGCGGACCGCCGCCCGCCCTGCGCGCCGCG
Seq A exon
GTGAGTGCGGCGGGCGCCTGGAGGTCACCGGCGATGAATGGGGCGGCGGGGCCCGAGGAAGGAGCGCCGAGCCGGCCGTGGGGGGACGGCGGCTCCGCGTGCTCCGGGCGGCGTGACGGGTGTGGGGCCCGGGGGTCCGAGCCGTGCCGAGGGCTGCTAAAGGGTTTCTGGGGACGCTGTCAGCTTTGGGGTTACGTTCTTGACGTCTGCCCGGTGTAGGTGTAAATCATAGCAAGGAGAGAACCGGATTAAAATGGCTTCAGGGGAAAACAGAGCGTACGTTCTTCAGTTAGTGCGGCGTTTTACAGGAAGCTCCCGGCCCTTTCTGTGCGAAAAGGGTTTATCTGTAACACAGGGAGCGTTTGAAAGCTGCACTTCCGTGAGTGCCAGAGCAAGCACGGCTCGCTGGAAGCGCACTGATAGGTTTGCTGGCTGCTCCTGCAAGAGGAGAAAGTTCAGCGCGCCTGAGCAGAAGTCTGTAAGTCGGGATCTCAGGGGCACGGGGGCGGCGGTGCCTCACGTGGTGCGGAGGGGATGATGGCTGCTGAGCTGCTGAGGGAAGAAATGGCGCGGCGCTGAACGCTTGCTTTCGTAATCAGATGTTCTCTGTCCATTCTGAATTCCGCTTTTGAAATTAACCCTGCTTTTTCTTCGTGCAG
Seq C2 exon
ATGTGTCACTTTCCCCAAAGAAGCTCAGTATGGCCATTTCCAAAACTGTGTAGTATACCTTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559:ENSGALT00000012224:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]