GgaINT0098071 @ galGal4
Intron Retention
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15998848-15999697:-
Coord C1 exon
chr2:15999572-15999697
Coord A exon
chr2:15998913-15999571
Coord C2 exon
chr2:15998848-15998912
Length
659 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCTGCTTTTTCTTCGTGCAGATG
3' ss Score
10.56
Exon sequences
Seq C1 exon
ATGGCCTTGCGCTGGTGGCGGCGGTGCGGCTCTTTCTGCCGCCGGGCACCGCCGCTCGGTCCCGCGCCGCCCCTCCGCCCGCCGGCGCACGGCCTACGCGGACCGCCGCCCGCCCTGCGCGCCGCG
Seq A exon
GTGAGTGCGGCGGGCGCCTGGAGGTCACCGGCGATGAATGGGGCGGCGGGGCCCGAGGAAGGAGCGCCGAGCCGGCCGTGGGGGGACGGCGGCTCCGCGTGCTCCGGGCGGCGTGACGGGTGTGGGGCCCGGGGGTCCGAGCCGTGCCGAGGGCTGCTAAAGGGTTTCTGGGGACGCTGTCAGCTTTGGGGTTACGTTCTTGACGTCTGCCCGGTGTAGGTGTAAATCATAGCAAGGAGAGAACCGGATTAAAATGGCTTCAGGGGAAAACAGAGCGTACGTTCTTCAGTTAGTGCGGCGTTTTACAGGAAGCTCCCGGCCCTTTCTGTGCGAAAAGGGTTTATCTGTAACACAGGGAGCGTTTGAAAGCTGCACTTCCGTGAGTGCCAGAGCAAGCACGGCTCGCTGGAAGCGCACTGATAGGTTTGCTGGCTGCTCCTGCAAGAGGAGAAAGTTCAGCGCGCCTGAGCAGAAGTCTGTAAGTCGGGATCTCAGGGGCACGGGGGCGGCGGTGCCTCACGTGGTGCGGAGGGGATGATGGCTGCTGAGCTGCTGAGGGAAGAAATGGCGCGGCGCTGAACGCTTGCTTTCGTAATCAGATGTTCTCTGTCCATTCTGAATTCCGCTTTTGAAATTAACCCTGCTTTTTCTTCGTGCAG
Seq C2 exon
ATGTGTCACTTTCCCCAAAGAAGCTCAGTATGGCCATTTCCAAAACTGTGTAGTATACCTTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559:ENSGALT00000012224:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]