HsaINT0122718 @ hg19
Intron Retention
Gene
ENSG00000148459 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:17759]
Coordinates
chr10:26986595-26991123:+
Coord C1 exon
chr10:26986595-26986769
Coord A exon
chr10:26986770-26991090
Coord C2 exon
chr10:26991091-26991123
Length
4321 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTTGTTTTTGATTTTACAGGTT
3' ss Score
10.74
Exon sequences
Seq C1 exon
GCCAGAGGCGGAGCCGCCGCCCTGCCGCGACTTTCAGACTCCGACCATGGCCTCGCGCTGGTGGCGGTGGCGGCGCGGCTGCTCCTGGAAGCCGGCGGCGCGGAGCCCCGGGCCCGGCTCCCCCGGCCGTGCGGGACCGTTGGGGCCGAGCGCCGCTGCCGAAGTCCGCGCGCAG
Seq A exon
GTGAGGTTGGGAGGCGCGCGCCCGGCGGGGCTCAGAGGTCACGGCTCCAATGACAGCAGTGGGCGGAATGAATGGGAGCGGGGAGCACGTGCGTCGCGACGCGGGGGCGCGCGGGGTAGCTCCGGGGTAGCTCCGGGGTGGGACTCCGGAGCTGAGGGGTGCTCGCGGTGGGACGGAGCCGCGCGTTGGACTGAAGTAGGGGCGCCCTACACGGGGTTGCAGAAAGCGGTGTCCTGGGGACCCCGGGAGCGTTTTGGGGGGTGGAGAAAGCGGTGGGATCCGTGTCCTGGGGGAAGCGCAGGAGCGATCAGATTGACCGCTGCTATATGGACAAGGTTAAGCCTGGAGAGCGACTGCAGCTATTTACTTTGGAGTTAGAGGAAGACAGATCTTGCCTGAAATTTTAGAGCCAAAGTGCTCAGAGCTCTCTCCGAGAAACGGAGGATCGAATCGGCCTCGGAATAGTCCGAAAAGGTCTTGTGGAGAATGCAGGGCTGGTGCTAGGGTGGACCGGACCTTAGTTGTCCAGCAGTGGCCTCGGGAGGAGAGCACACCTGGATGGGGCTGGAATGACACTGGAAGGAGAAAGGCCCGAGGCCGTCAGGAGGAGAGAAACCCTGGAGTCATCTAAAGTCAGAATCTCAGCGATAGCCCATTCTTTCAGGGTCTCCTCTGCTGCCTTTGGGTTCCGATCTCCTTTTTCTCCCTTTCTGGTCAGTTTAGCCCCTGTAAATGGACACTGTGAGCCCTTCTGCGCTTTGTAATGATTCTCAGTGTGCCATGGGGTAGGCCCATGCTATTAGCATAACCGTGCAAAATCTATGGACTCACTGTTACTTAAGTTTATTTGAATTTAGTACTCTTTTAATTCAGATTTGGTATACTTTATGTGTCCGTGTTCTCATCAAACATCATTTCCCAGTATGAAATATATAACACTTATAAATATCTACTTTGTACCAAAGTAGATGCGTATCACAAATTATCCAAAACAAGGCTTGGGCCAGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGAATCGGTTGAGGCCAGGAGTTTGGGACCAGCCTAGGCAACATAGCAAGACTCTGTCTCTATAAAAAATAGAAAAAATTCACCAGGTGGGGTGGTGCATGCCTGTAGTTCTACCTACTCAGGAGCCTGAGGGAGGAGGATTGTTCGATCCCAGGAGTTCAAGATTACAGTGAGCTGTTTATTGTGATAGTGCCAGTGCACTCCAGCCTGGGCAACAGTGTGAGACCCTATCTCTAAAAAATCTAAAGCAAAAAAGACGTTTGGAGACCAAGTGGCAGCTGGGCAACTAGACAATGCTAGAGAGTAAAGAGAACAGAATATGGGGGGTGAGGGGCATGTGGGAGAAGAGGCTTAGAGGAGGAAGGTAGGCTTTGCTGTGATCCATTTCAGGACTGTTCTCTCCAGACTTCAGATATTTCTAGTTCCACAGAAGAAGCCAGTATTTGAAGAGATGGGTGCATCCACCCTCTTATGCCACTACATGCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTGACACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGAATCTCGGCTCACTGCAAACTCCACCTCCCAGGTTCAAGCGATTCTCCTGCTGCAGACTCCCAAGTAGCTGGGATTACAGGCGTACACCACGACCCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGCATTTCACCATGTTGCCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGATCCACCCCCTCCTCGGCCTCCCAAAGTGCGGGGATTACAGGTGTGAGCCACCACGCCTGGCCTGACACTTCTTTTTAAAAAAGTTTCTTGCCCACCAAGCAACCTTAGCCAGGGAAAGTGTGCTTTTCTGGAGAGAATATGCTTTATGGCCTCCCCGTCTGCATGACGACAAGGAGGAATTCTGTGGACTCATGATGCCAAGATCATGTATTTCTGATGTGTGTGTCAGTGATGCCTTTCACTATATGTTAATATGTTAGCATTCTGGTGTCTGCCTCAGGCATGTGTATTTTGGTTACTTCAAGTCTCTTAGGGCCTGATAGTCCTTGGGGACACAGAACTACAATAACTAAGCCACAGGGACAAAGAGCGGCAATAATTAAGCCACGTCTTGCTCTCCACCAGAGCTCTACTACCTCCTAATGGTTGTACATTCTTCTGACTTCACTAGTAGTGTGAACAAATATTGTAATACAATAAAAACCAGTGTGCATGTGATCGTGCCAAATCACTTCTCAATATATCTTTGATTTTTTTTTTTAATTTATTTTTTTAGAGACGGGGACTTTTTGTGTTGGCCAGGTTGGTCTTGAACTCTTGGACTCAAGCCATTCCCCCCTCCCCCCCACCCCGCTTGAGGATTGGCACACGGCCATGTATTTGATTCTTACCCAGCACTTTCTCTTTAGCTGAGCGTGGTGGCTCACGCCTGTAATCCCAACAGTTTGGGAGGCCGAGGCAGGAGAATCCCTTTAGCTCAGGAGTTCGAGACCAGCCTGGGCCACTTAGTGAGACCTCCTGATATGGTTTGGCTCTGTGTGCCCACCCACATCTATCTCGAATTGTAATCCCCAATTATATTTGGGGACCAGGGAGGGTCAAGGGAGGGACCAGGTGGAGGTAATTGGATCATGGGGGTGGATTCCCCCATGCTGTTCTCATGATAGGGAGTTCTCACAAGATCTGCTGGTTTTATAAGTGTTTGGTAGTTCCTCCTGTGTTCATTCTGTCTCCTGCCGCCTTGTGAAGAAGGTGCTTGTTTCTCCTTCTCCTTCTTCCACCATGATTCTAAGTTTCTGAGGCCTCCCCAGCCATTCAGAACTGTGAGTCAATTAAACCTCTTTCCTATAATTATAGATTGCCCAGTCATGGGTAATTTCTTTATAGCAGTGTGAGAATGGACCAATACAGATAATTGGTACCAAAGTAGTTGGCATTGATATAAGATACCTGAGAATGTGGAAATTACTTTGGAACTGGGTAACAAGCAGAGGTTGGAATAGTTTGGAGGGCTCAGAAGAAGAAAGGAAGATGTAGGAAAGTTTGGAAATTCCTAGAGTCTTGTTGAATGGCTTTGACCAAAATGCTGAAAGTGATATGGACGATGAAGTCCAGGCTGAGGTGGTCTCAGATGGAGATGAGGAGCTTCCTGGGAACTGGGCAAAGGTCACTCTTGCTATGCTTTAGCAAAGAGACTGGTGGCATTTTGCCCCACCCTAGAGATCTGTGGAACTTTGAGCCTGAGAGAGATGATCTGAAATTGGAACTTAAATTTAAAGGGGAAGCAGAGCATAAACGTTTGGAAAATTTGCAGCCTGAAGATGTGATAGAAAAGAATTTTCTGGGGAGGAATTCAAGCTGGCTGCAGACATTTGCATAAGTAACAAGGAGCCGAATGTTAATAGCCAAGAGAATGGGGAAAATGTCTCCAGAGCATGTCAGAGACCTTCTCTGCAGCCCCTCCCATCACAGGCCAGGAGGCCTAGGAGGGAAAAATGGATTCATGGGCTGGGCCCAGGGCCCTGCTGCTCTGTGCAAGAGCAGCCCTGGGACTTGGTGCCCTGCTTCCCAGCCGTAGCTAAAAGGGGCCAAGGTACAGCTTGGGCCATTGCTTCAGAGGGTATAAGCCCCAAGCCTTGGTGGCTTCCATGTGCTGCTGAGCCTGCAAGGTGCACAGAAGACAACAATTTGGGAACTTCTGCCTAGATTTCAGAGGATGTATGGAAATGCCTCAATGCCCAAGCAGAAGTCTGCTGAAGGGGGGAGAACCCTCATGGAGAACCTCTGTTAGGACAGTGCAGAAAGGAAATGTGGGGTTGCAGCCCCCACACGGAGTCCCTGCTGGGGCACTGCCTAATGGAGCTGTGAAAGGAGGGCCACCGTGCTCTAGACCCCAGAATGGTAGGTCCACCAACAGCTTCCACCGTGCACCTGGAAAAGCTGCAGGCACTCAATGCCAGCCCATGAGAATAGCAGTGGGGGTTGAACCCTGCAAAGCCACAGAGTCAGAGCCACCCAAGTTCTTGGGAGCCCACCCTTTGCATCAGTGTGACCTAGATGTGAGACATGGAGTCAAAGATCATTTTGGAGCTTTAAGTAATGACTGCCCTGCTGGGTTTGGACTTGCATGAGGCCTGTAAGCCCCTTCGTTTTGGCCAATTTCTACCATTTGGAATGGGAACATTTAACCAATACCTGTACTCCCATTGTATCTTGGATGTAACGTAACTTGTTTTTGATTTTACAG
Seq C2 exon
GTTCATAGGCGGAAGGGACTTGACTTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459-PDSS1:NM_014317:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)