GgaINT0098565 @ galGal4
Intron Retention
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32319649-32320293:-
Coord C1 exon
chr2:32320213-32320293
Coord A exon
chr2:32319712-32320212
Coord C2 exon
chr2:32319649-32319711
Length
501 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ATATTTTTTTCCTCCAACAGATG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GGAACTTCGGTTTTGGTGATGCACGTGGAGGTGGTGGCAACTTTGGTCCAGGACCTGGCAGCAATTTCAGAGGGGGAGCTG
Seq A exon
GTAAGACAGGCATGTTTGTAGCATTTGTTTTTGTTCACATCATCGTTCAGGTTCTGGGTAATGGTAAGCTACTGCTGTTTAATGGAAATGCATCTGTAAGCGTTAAAAATTTTTTGGGAAAGAGGACTTGCAAACCTCTTGCACAGTACACAAATTGATGAGATAGCTTTTCAGAAAACTCAAGTGGCTTAATTTTTAGAGGATTCTATTACATGCAGTGCTCAGGAGCTTCACGGTGAGGGATTTCTTTCTTAAACATTTAAATTACATAAAAGCAAGCCAGGTTAGCTGTGTTCAAAGCTAACCCAGCACTTTACAAATGCAAGAAAGTAGGTGGTGTAGAGGAATGGTAGATAGGTTGTTTCACATACGTTTGATCCAAATTCAAGTGTGTGTACTTCAGTAGTCTGTGAGATTTGGGTCTTAAGGTCATATGGTTTAGATAGAAATCAGTTTGCTACAGATGAATTGAAATAAATATATATTTTTTTCCTCCAACAG
Seq C2 exon
ATGGGTATGGGAGTGGCCGTGGGTTTGGTGATGGGTATAATGGATATGGTGGAGGGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036:ENSGALT00000017975:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.682
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]