RnoINT0071393 @ rn6
Intron Retention
Gene
ENSRNOG00000011175 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:RGD Symbol;Acc:1310403]
Coordinates
chr4:81239317-81240062:-
Coord C1 exon
chr4:81239982-81240062
Coord A exon
chr4:81239380-81239981
Coord C2 exon
chr4:81239317-81239379
Length
602 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTTACTTTCTTTAAACAGATG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GAAACTTTGGTTTTGGAGATTCTCGAGGTGGCGGTGGCAATTTTGGACCAGGACCAGGAAGCAACTTTAGGGGGGGTTCTG
Seq A exon
GTAAGTTTCTATTTGGAGAGCTTTTGAAGGGTGTGATATACTTGCTTTATGAATAGAAGGGCTTCAGTGAGATAAACTCAATAGAATTTGCCTTCGGCATGAAGTGTATAGTGTAGAGGAAGAGAGGAGAGGAGAGACCCTGTACTCTGACACAGTGAAAATGTCCTTTGACCACCATGTACACTGGTTCATATATGTATTCACACATGCTTATTCAGTGAACACATAAGTTTAAAAGTTAAAGCTGTATGGGATATGAGTAAGATTTGAAAAAACCCAGAAGTAGCAGGGTCCTAAAGCATCACAGAAATCCATCAACTAGGTGCTTACATGCATGGAAAATGGGTTGCATATAGGTTACACATGGTGAACACATAGCCAAAGGTTGAATGAACCCTAGCACCTGAAAACCAGACAAGATAACTGTAATTCAATAATTGGTAACAAGAGGCACACATTAAAGTACTTTGAATTCAATCAAGGCTTTGACTTTCCACCACCTGTCCCCCAACCAATATAAACTAGTGAGATTTCTAGCCATCCTCATTCTGAGATATTAGTGGGGAGAAAAATTAAGTGTAATTCTTACTTTCTTTAAACAG
Seq C2 exon
ATGGATATGGAAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011175:ENSRNOT00000015152:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]