DreINT0078590 @ danRer10
Intron Retention
Gene
ENSDARG00000059351 | hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
Coordinates
chr9:1693747-1693935:-
Coord C1 exon
chr9:1693882-1693935
Coord A exon
chr9:1693795-1693881
Coord C2 exon
chr9:1693747-1693794
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGAAAATTTATTTCTAATAGGTG
3' ss Score
7.26
Exon sequences
Seq C1 exon
ACCGTGGTGGAGGTGGTGGTAATTTTACGGGCAGAGGAGGAAACTTTGGCAGAG
Seq A exon
GTGAGATGATCCTGTGTGTGGATTGCAGCTCATATAAATTGCTGCTCAGGTGTAAATAACGCTATGGTGAAAATTTATTTCTAATAG
Seq C2 exon
GTGGTTATGGAGGAGGACGAGGAGGAGGAGATGGATACAACGGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059351:ENSDART00000137210:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=NA C2=0.459
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(15.9=57.9)
A:
NA
C2:
PF059186=API5=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTGGAGGTGGTGGTAAT
R:
GCCGTTGTATCCATCTCCTCC
Band lengths:
96-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]